Gene Rpal_2453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2453 
Symbol 
ID6410115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2647381 
End bp2648130 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content65% 
IMG OID642712332 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001991442 
Protein GI192290837 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.728081 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAAGA CACTGCAAGG CAAAGTGGCG CTGGTGACCG GCGCATCGAA GGGCATCGGC 
GCGGAGATCG CGCTGAAGCT CGCGGCCGAA GGCGCCGCGG TCGCCGTGAA CTACGCCTCC
AGCAAACAGG GCGCCGACGA CGTCGTGGAC AAGATCACCG CGCAAGGCGG CAAAGCGATC
GCGGTCGGCG GCAGCGTCGC CGATCCCAAG GAGGCGCAGG CCATCGTCGA TGCGACCGTC
GCAGCGTTCG GTCCGATCGA CGTGTTGGTC AACAATGCCG GCGTGTATGA ATTCGGCGCG
CTCGATGACA TCACGCCGGA GCACTTCCAT CGCCAATTCG ACGTCAACGT GCTCGGGTTG
CTGCTGGTGA CGCAAGCGGC CGCGCGGCAG TTCAACGACG GTGGCAGCGT CGTCAATATC
TCATCCGGCG TTTCGACGAT CGCGATGCCA AACACCGCGG TGTACGGCGC CACCAAGGCG
TCGGTCGATC TGATCACGGC GGTGCTGGCG AAAGAACTGG CGCCGCGCAA GATCCGCGTC
AACGCGGTCA ACCCCGGCAT GGTGGTCACC GAAGGCGTCA AGTCTGCCGG CTTCCATGAC
GGCGAGATGC GAAAGCAGGT CGAAGCGATC ACCCCGCTCG GCCGCATCGG CGAGGCTGCC
GAGATCGCTT CGGTCGTCGC CTTCCTCGCC TCCGACGGCG CGTCTTACGT GACGGGTGAG
ACGCTGCATG TCACCGGCGG GCTCAAGTAA
 
Protein sequence
MTKTLQGKVA LVTGASKGIG AEIALKLAAE GAAVAVNYAS SKQGADDVVD KITAQGGKAI 
AVGGSVADPK EAQAIVDATV AAFGPIDVLV NNAGVYEFGA LDDITPEHFH RQFDVNVLGL
LLVTQAAARQ FNDGGSVVNI SSGVSTIAMP NTAVYGATKA SVDLITAVLA KELAPRKIRV
NAVNPGMVVT EGVKSAGFHD GEMRKQVEAI TPLGRIGEAA EIASVVAFLA SDGASYVTGE
TLHVTGGLK