| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2434 |
|---|
| Symbol | |
|---|
| ID | 6410096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2623131 |
|---|
| End bp | 2624735 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642712313 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001991423 |
|---|
| Protein GI | 192290818 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.097494 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGTC TTGAAGCGAC CGGTGGCGTG CCGGGACCGG GGCGGATCGG CCGCGTGGCG
ATCGGCGATA TCTTGCGTAA ATCGGCGCGG CGGTTTCCGG AGCGCGTCGC GCTGACCGAT
GGTGGCCGCA GCGTCACCTA CACCGAGCTG GAACGCGACG CCAACCGCTT CGCCAACGCG
CTGGTGGCGC GCGGACTGAG GCCGGGCGCC AAGATCTCGA CCGTCTGCAA CAACTCGATC
GAGTTCGTCA AAGCGCTGTT CGGCATTCAT CGCGCCGGCC TCGTCTGGGT GCCGATCAAC
ACCATGCTCG GCCCCGACGA CATGGGCTAC ATCCTCGACC ACGCTGGCGT GAAGGTCGCG
GTGATCGACG ACAATCTGTA CGGCCAGCCG GACCGCCGCG CCGCGCTGGA AGCGCGCGGC
ATCGATCTCA TCGCCATCAA CCTGGCCGGC AAGGCCGCCG ACACCGGATT GCCGGTGTTT
GATCAGCTGA TCGAGGGCCA GTCCGAGATC GAACCAGACG TCTCGTTCGA CGATCGCGAT
CTGGCGATGA TCATCTACAC CTCGGGCACG ACCTCGCGGC CGAAGGGCGC GATGCACTGC
CATCTCGCGG TCACCATGGC GGTGATGAGC AACGCGATAG AGATGCAATT GTCGCGCAAG
GACGGCATCA CCGGGCAGTT TCCGCTGTTC CACTGCGCCG CCCATGTGCT GCTGCTGAGC
TATTTGATCG TCGGCGGCCA GATGGCGATC ATGCGCGGGT TCGATCCGGT CGCCTGCATG
GAGGCGATCC AGCGCGACAA GCTCACCGTG TTTATCGGCC TACCGCTGAT GTACCAGGTG
ATCCTCGATC ATCCGCGGCG CAAGGAGTTC GATCTCTCCA GCTTGCGCTG CTGCATCTAC
ACCATGGCGC CGATGCCGCG GCCGCTGCTC GAGCGTGCGA TCGCCGAGCT GTGCCCGACC
TTCGTGCAGC CCTCGGGGCA GACCGAGATG TATCCGGCAA CGACGATGTC GCAGCCGGAC
CGCCAGCTCG CTCGCTTCGG CAACTACTGG GGCGAGTCGA CGCTGGTCAA CGAGACCGCG
ATCATGGACG ATGCCGGCAA TCTGTTGCCG CCCGGCGAGG TCGGCGAGAT CGTGCATCGC
GGCCCCAACG TGATGCTTGG CTACTACAAG GACCCCGAGG CGACCGAAGC TGCGCGAAGA
TTCGGCTGGC ACCACACCGG CGATCTGGCG CTGATCGACG AGCACGGCGA GGTGCTGTTC
CTCGACCGCA AGAAGGACAT GATCAAGTCC GGCGGGGAGA ACGTTGCTTC GATCAAGATC
GAGGAGACGC TGCTGGCGCA TCCGTCGGTG ATGAACGCCG CGGTGGTCGG CCTGCCGCAT
CCGCAATGGG GCGAGGCGGT GTCCGGCTTC GTCAAGCTGA AGCCCGGCGC GTCCGCGACC
GAGGCCGAGA TCATTGAACA TTGCAAGAAG CATCTCGGCG GCTTCCAGGT GCCGAAGCTG
CTGCGGATCG TCGACGAGAT GCCGATGACC GCGACCGGCA AGCTGCGCAA GGTCGAGCTG
CGCAATCAGT TCACCGATCA CTTCATGCTC GGTCAGACGG GGTGA
|
|---|
| Protein sequence | MTSLEATGGV PGPGRIGRVA IGDILRKSAR RFPERVALTD GGRSVTYTEL ERDANRFANA
LVARGLRPGA KISTVCNNSI EFVKALFGIH RAGLVWVPIN TMLGPDDMGY ILDHAGVKVA
VIDDNLYGQP DRRAALEARG IDLIAINLAG KAADTGLPVF DQLIEGQSEI EPDVSFDDRD
LAMIIYTSGT TSRPKGAMHC HLAVTMAVMS NAIEMQLSRK DGITGQFPLF HCAAHVLLLS
YLIVGGQMAI MRGFDPVACM EAIQRDKLTV FIGLPLMYQV ILDHPRRKEF DLSSLRCCIY
TMAPMPRPLL ERAIAELCPT FVQPSGQTEM YPATTMSQPD RQLARFGNYW GESTLVNETA
IMDDAGNLLP PGEVGEIVHR GPNVMLGYYK DPEATEAARR FGWHHTGDLA LIDEHGEVLF
LDRKKDMIKS GGENVASIKI EETLLAHPSV MNAAVVGLPH PQWGEAVSGF VKLKPGASAT
EAEIIEHCKK HLGGFQVPKL LRIVDEMPMT ATGKLRKVEL RNQFTDHFML GQTG
|
|---|
| |