Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2278 |
Symbol | |
ID | 6409939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2464559 |
End bp | 2469316 |
Gene Length | 4758 bp |
Protein Length | 1585 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642712162 |
Product | NERD domain protein |
Protein accession | YP_001991273 |
Protein GI | 192290668 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.468792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAATCA AATTCTTTCT TCCGCAGGGC CCCCAGCCAA CGGAAATGGC AGGGCTTGAG GACATTCGCG CAACCTTTCC AAAGCATTGG AAGGGCTACG CGAATTTCGT CATGCGCCAA CCGCAGCGGC GGGGCCAGGA CCGCGAAATC GATATTGTGA TCGTCACACC AGATCGCATC ATTCTCGTTG ACCTCAAGCA TATTCGTGGG CGCATCGAGA ATCGAGGAGG CATCTGGCAC CGCGACGCAG ACATTATCGG TGCGTCACCA GCTCATAAAA TCCGCGACAA TGCCAAAGTG CTCGCGTCGT TGATAAGGTC GGAGATCCAC CATTTTCCCG CAGTGCCGCC TGTCGAAAGC CTTGTCGTCC TCACACATCC GCAATGCGAT CCTAGCGGTC TCGATCAGGT CGAACGTGAT CGAACGCTCA AGCTTTCTGA TTTCCTGAAG ATTACGCGTG AACAGAATTT TCGGAACCTC TTCACCGGTC CAACCAAGTA CTCTGAGTCC AACTCGCTCT GCTCGGGGCA ATGTGGAAAC GCTCTCCAAA AGTTCTTCAG CAACGGAAAA CTCTTTGAGC CCCGGAAGAC GCGTTTTCAT GGCTTCATGC CAGTTGGTGA TCCGGCTTTC AAGCATCCTC TTTTTGAAGA GTTTTCCTGC CATCAATCCG AAGATCCGAA CTACACGGGC CTTCTTCGGC TGTGGGACTT TAGTGTCGAT GGCGAATTTA TCGTTGAAGA AGCGCGTCGC CCGATCGCTG AGCGGGAGAG AGCGGTTCTG GGGCATATTC GGGTTCAAGA TCCAGCCCTC TATGAGAACT ATGTTCTCCG CTCTCTCCAT TTCGATTCCG AATACACGCT GAGATACTCT GAAATCTTCG ATTGCCTGCC CGATTTAGAG CGCCTCAGCC GTTACCATAG CGTACTAAAC GATCTCACAT TTGAACGACG GACTGAGCTG GCCAGGCTTT TTTTGGATCG CATTGCGAGT TTGCATCGTA TCCGGGTCGC TCACCGGGAT TTGGATCGGC ATTCCATCTG GATCGATGAG CGACGCAGCA AAGTGGTGCT GTCGAGTTTC GGGGCCGCTC ATTTTCCAGA ACGAAAGTCC ATCGGGGGCG CCCGTTCAAA GCTGCTGGCG GGTGGTTATC GAGTCCCGGA GGACGTTGGC GAAAGCCAAA AGGGAACTCC GTTCCAACAG GATGTGTTCC TTGCAGGAGC GGTTGTATGG AATCTTCTGG TAGGAGCCCG ACTGGAGGAG ATAGACGGTG TGCCGGTCTG GAGCTCTCGC GACCTTGAGG ACGTTGGCTT ACCCGATGCA TTTCAGGGAT GGTTTGAGCG TTGTTTAAAG ATCAACGCAA ACGAGCGCTA TGAGAGTGGC GTCGATGCGG CTGACGCGTT CGCTGAGCTG CTTCGGAAAA CTGAAAAGGC ATCGCTAGAA CGGCAGTTGG ATGCCTATCG GCGTGATATC GATCCTATAT CAGACTATGA GCCTTCGGAC TGGATAAGTA AGAAACCTTA TCGCATCTAC AAATCTTTGA AGGATAATGA GAGCCACTTC GTCAAGAGTT GGCCAGAACG AATTCTCGGT GAGCGCAGAA AATCGGCCGC GCGACTGATC GAGTTCTTCG GCAAAGCCGA TGCGTTACGA CGGATCGACG CCAAATGGCT TCCGCGAATA AGTGTTGCGT GTCTTTGCAC CGACGGTCTT CTGCTTATTC AAGATTGGGT TGATGGGGAA AAGCTATCCG CTTGTGACGT CTCGACCTGG ACACCTGAAG GCTTGCGTCG CTTCGTTGTC GGGCTGATCG ACGCCGTCGA CGAGCTTCAT AAGCTTGAAC TGAATCACGG CGACATCTCG CCGGAGAATA TCCTTGTCTG CTTCGATGGG GACATCCCCC GACCTGTACT AGTTGATGTA GTCGATTTTT CTGCGGATGA CATCGGACGC AGCACCCCTG CTTATTGTCC CGCCGAGGAC AATGATTTGA GGAGTCGAGA CCGATATGCC GTCGGTCAAA TTGCGTTGGA GCTTGCAGAA GCCTGCACGG ACGCAGAGAC GAAAGCTCTG CTTCGATTGG GTGCCGGCAA ATGCGCCGAA GGGGCCGCAC CGTGGCTCAC GCTCAAGGCC CTGAAGGATG CAGTCGTATT TCGCCGAGTG GCACCAACCA AGATCAAACT CGATATCGAG ATCGAGACTC CCCGCACAAC GTTCGAAGGC GCAATGCTGT CAGACAATGG CGTATTCCAC ATTGTCAAGT CGAAGAGGGC GCCTGACTCG ATCGAAGTGT TCGGGTTCGA TCAACGCGTT ACGATCGATT TTGATCCGAA AGATGCCAAG CCGGTAAAAG CGATCGCGAA CAGAATCGAT ATGGGGCAGG CGGCGTGGGC TCAACGACAC CGGCTCCTGT CCTTTGAGGG GTCGCTCAAG ATCGTGCGAA GCAGATCAAG GAGATTTGTC GGACTCGACC ATCTGCCCGA ATTAGTCGCG TCCCATCTCG GTTCAGAGCC TGTAATCGCA AAGTCGGAGG CTGCGCCGAA GGTCACCGAT GCCCCAGATC CTGCCGCACC GACCACAAAA CCTGCCACAC AGAAGTTTCC AGTCGAGGAT TTCTGGAACG GGACTATTCT GGCAGAAGAT GAAATCAGCC CGGAGTTCAC GCTTGCGCAG GAGCCGAGTT ATGACCGCGA TGAAAGGACT CTGCACCTTA TAGCGGAAGA TAACCTGCCG GAATTTGAGT CCGGAGATGG CCAGTCGATC AGTATACAAT GGAACGGGTA TAAGCTCGGC GATCTAGATA CGGAGAGATC GCGGGGGACC ACGGTCGTCG TCCGGAATGT ACGTAACGTG CGCGGGTTGA ATAAAGGGGC AGTGTTAAAG ATCCCGGACG ACCTTGTCAG CTTCCAGCGG CGGTCTCGGG CAGTGGGTCG CATTCTGGAT CGAAAATCGC AGATCCCTAA TCTTATTGGA TTTTTCGATC CGGCTGTCGA TCTTGCGCCT CAGACGTTCG GGCCCGAAAT CGACGACGCG ATCCTATCGC GTTATGGACT GAATCCAGCG CAAAACGACG CGTTCAAACA TTTGTGGCGT TATGGACCGC TTGGGCTCCT TCAGGGCCCG CCGGGTACAG GCAAGACGAC GTTCATTGCT GCATTCGTGC ACTATGCGTT GACTGAACTC CGGCTGAAAA ATGTGCTGGT TCTTTCACAA TCCCACGAAG CTGTTAACGC GGCCTCCGAG AAAATCCTCC AGACGGCTGC CAAGCACGGC GGCAACATCG AGATGCTGCG CGTGGGGCAG CACTCGAAGA TTTCGCCGAT CCTCCACAAT TATCACGCCT TCGCGATCCA GGATCGATAC CGAGAATTGT TTAGAGCTGC GGTGAAGGAG CGTGTTCTCG CTCCGCTAAG TCGGTTGGGT TTGGAAAGGG ACTACATTTA CGCTGCTGTC GAGATCGAGA ATTCACTCGG CTCGCTACTT AAGCAGATCG AGTTTTGCGA ACAGGATATT GCGACGTCGC GGGATCAGGA CACCGTTGCG GCGGCGCATG AACGCCTGGA GGGCCTGAAC CTCGCGTGGG CAGACGCTGT GGAAGAGCAC GGCGTCTCAC CTGAATTGGA TCCAAGAAGC GCGCTTGAGG AAATCCGGGA TACGTTGGCT GACCAGTATT CCGTCCATGA CGTCGATGCA CGGCGCAGAC TCCTGCGCGT CCACGGGTTA GCACTGGAGT GGGGAGCAAC GCTTGGAATG CGAGGGCGGA GTTTGGAAGA GCTCATTGCA AGGAGCCGCA ATCTGATCAG CGGCACATGT GTGGGTATTG GGCGATACGG TATCCAAGTC GATCGGAATG TGTACGATCT TGTGATCATC GACGAGGCCG CACGCTGTAC CCCAGGCGAA CTTGCGGTTG GAATGCAGTC TGGCCGACGA GTAATTCTGG TTGGCGACCA CAAGCAATTG CCGCCCCTTT ATGGTCATGA GCTGATCGCC GCTCTCGGGG AAAGGCTGAA TATCCGCTCC AAGAGGGAGC TGAACCGCAG CGACTTCGAA CGAGCTTTCC ATTCAGCCTA CGGGAAGGCT GTCGCTCGAA CGCTGACAAG CCAGTATCGA ATGGCGCCGA AAATCGGAAA GCTTGTTGCT GAGACGTTTT ACCCAGGCCA GGAGCTAGAA ACCGAGCGGG GTGGCGCGCC GAAGTATTAC GAGTATCTGC CGCGGCCGCT CGACGACGAA ATGGTATGGA TTGATACAGG TCACTCGAAA CATTCCAGAC GAGAGAGAGA GGCCGGAAGC AGTTTCGTCA ATAGGACGGA AGCTGCCGTA GTCATTTCAC TTCTGAAAGT GATCGCCGGA ACGAAGGGTT TCGTTGATGA GGCGCTCGTC GATCTTCGGG AAGAGGAGCC GCTCGTTGGC GTGATCTGCA TGTATGCTCC TCAGGTCGGT ATGATAGAAG AAATGTTGAT TACGTCGGAT TTGTCACCTG ACTTCCAGAA GCTGGTTAAG GTCGGGACGG TCGATAGTTA CCAAGGCAAG GAGAATCGAA TTGTGATCCT GTCTCTTGTA AGAAGTAATC CGGAGAGGAA TATGGGTTTC GTGCGCGCGG CTAACCGCAT CAATGTTGCA CTGTCTCGAG CCATGGAGCG TCTTATCATC GTCGGAAGCA CGGGCATGTT CGAAAGAAAT GGAAATGCGC TTGCTCCAGT CATTAAGCAC CTCAAAGCAG GCGGGAGAGT GCTTCCAAGT GCGGGTGTGT TGCAATGA
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Protein sequence | MEIKFFLPQG PQPTEMAGLE DIRATFPKHW KGYANFVMRQ PQRRGQDREI DIVIVTPDRI ILVDLKHIRG RIENRGGIWH RDADIIGASP AHKIRDNAKV LASLIRSEIH HFPAVPPVES LVVLTHPQCD PSGLDQVERD RTLKLSDFLK ITREQNFRNL FTGPTKYSES NSLCSGQCGN ALQKFFSNGK LFEPRKTRFH GFMPVGDPAF KHPLFEEFSC HQSEDPNYTG LLRLWDFSVD GEFIVEEARR PIAERERAVL GHIRVQDPAL YENYVLRSLH FDSEYTLRYS EIFDCLPDLE RLSRYHSVLN DLTFERRTEL ARLFLDRIAS LHRIRVAHRD LDRHSIWIDE RRSKVVLSSF GAAHFPERKS IGGARSKLLA GGYRVPEDVG ESQKGTPFQQ DVFLAGAVVW NLLVGARLEE IDGVPVWSSR DLEDVGLPDA FQGWFERCLK INANERYESG VDAADAFAEL LRKTEKASLE RQLDAYRRDI DPISDYEPSD WISKKPYRIY KSLKDNESHF VKSWPERILG ERRKSAARLI EFFGKADALR RIDAKWLPRI SVACLCTDGL LLIQDWVDGE KLSACDVSTW TPEGLRRFVV GLIDAVDELH KLELNHGDIS PENILVCFDG DIPRPVLVDV VDFSADDIGR STPAYCPAED NDLRSRDRYA VGQIALELAE ACTDAETKAL LRLGAGKCAE GAAPWLTLKA LKDAVVFRRV APTKIKLDIE IETPRTTFEG AMLSDNGVFH IVKSKRAPDS IEVFGFDQRV TIDFDPKDAK PVKAIANRID MGQAAWAQRH RLLSFEGSLK IVRSRSRRFV GLDHLPELVA SHLGSEPVIA KSEAAPKVTD APDPAAPTTK PATQKFPVED FWNGTILAED EISPEFTLAQ EPSYDRDERT LHLIAEDNLP EFESGDGQSI SIQWNGYKLG DLDTERSRGT TVVVRNVRNV RGLNKGAVLK IPDDLVSFQR RSRAVGRILD RKSQIPNLIG FFDPAVDLAP QTFGPEIDDA ILSRYGLNPA QNDAFKHLWR YGPLGLLQGP PGTGKTTFIA AFVHYALTEL RLKNVLVLSQ SHEAVNAASE KILQTAAKHG GNIEMLRVGQ HSKISPILHN YHAFAIQDRY RELFRAAVKE RVLAPLSRLG LERDYIYAAV EIENSLGSLL KQIEFCEQDI ATSRDQDTVA AAHERLEGLN LAWADAVEEH GVSPELDPRS ALEEIRDTLA DQYSVHDVDA RRRLLRVHGL ALEWGATLGM RGRSLEELIA RSRNLISGTC VGIGRYGIQV DRNVYDLVII DEAARCTPGE LAVGMQSGRR VILVGDHKQL PPLYGHELIA ALGERLNIRS KRELNRSDFE RAFHSAYGKA VARTLTSQYR MAPKIGKLVA ETFYPGQELE TERGGAPKYY EYLPRPLDDE MVWIDTGHSK HSRREREAGS SFVNRTEAAV VISLLKVIAG TKGFVDEALV DLREEEPLVG VICMYAPQVG MIEEMLITSD LSPDFQKLVK VGTVDSYQGK ENRIVILSLV RSNPERNMGF VRAANRINVA LSRAMERLII VGSTGMFERN GNALAPVIKH LKAGGRVLPS AGVLQ
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