| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2260 |
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| Symbol | |
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| ID | 6409920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2452686 |
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| End bp | 2453690 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642712144 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001991256 |
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| Protein GI | 192290651 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0772671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGAAAT CCATTCTAGC ACTCGCATCG ATCGCCGTGT TCGGGCTCGT CGGCCCGGCG
GCCGCGCAGT CGCCGATCGT CATCAAGTTC AGCCATGTGG TGGCGCCCAA CACGCCGAAG
GGCATGGCCG CCGACAAGTT CAAAGAGCTC GCCGAGAAGT ACACCGACGG CAAGGTCAAG
GTCGAAGTCT ATCCGAACTC GCAGCTGTTC AAGGATAAGG AAGAGCTCGA CGCGCTGAAG
CTCGGCGCCG TGCAGATGCT CGCGCCCTCG ATCTCCAAGT TCGGTCCGGC CGGCGTCAAG
GAATTCGAAG TCTTCGATCT GCCCTACATC CTGCCGGACA TCGCCGCACT GCGGAAGGTG
ACCAACGGCC CGGTCGGCGC CAAGCTGTTC AAGCTGCTCG ACTCCAAGGG CATGACCGGT
CTCGCTTACT GGGACAACGG CTTCAAGATC ATGAGCGCGA ACAAGAAGCT GATCGCGCCG
GAAGACTACA AGGGCCTGAA GTTCCGCATC CAGTCGTCGA AGGTGCTCGA CGCCCAGTTC
CGCGCGCTCG GCGCGATCCC GCAGGTGCTG GCGTTCTCCG AAGTGTATCA GGCGCTCCAG
ACCGGCGTTG TCGACGGCCA GGAGAACACG CCGTCGAACA TGTACACCCA GAAGATGCAC
GAAGTGCAGA AGTACACCAC CGTCACCAAC CACGGCTACA TCGGCTACGC GGTGATCGTG
AACAAGCAGT TCTGGGACGG CATCCCGGCC GACGTCCGCG CGCAGCTCGA CAAGGCGATG
AAGGAAGCCA CCGAATTCGG CAACAGCCAG TCGCAGAAGG AAAACGCGGA AGCCCTCGAG
GAGATGAAGA AGTCGGGTAA GACCGAGATC ATCACCCTGA CGCCGGAGCA GAACCTCGCG
ATGCGCAAGG CGATGGCGCC GGTGTACGAC GACGTCGGCG GCCGCGTCGG CAAGGCTCTG
ATCGAAGAGT TCATCAAGGA AAGCGGCGGC GGCCCGACCA AGTAA
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| Protein sequence | MRKSILALAS IAVFGLVGPA AAQSPIVIKF SHVVAPNTPK GMAADKFKEL AEKYTDGKVK
VEVYPNSQLF KDKEELDALK LGAVQMLAPS ISKFGPAGVK EFEVFDLPYI LPDIAALRKV
TNGPVGAKLF KLLDSKGMTG LAYWDNGFKI MSANKKLIAP EDYKGLKFRI QSSKVLDAQF
RALGAIPQVL AFSEVYQALQ TGVVDGQENT PSNMYTQKMH EVQKYTTVTN HGYIGYAVIV
NKQFWDGIPA DVRAQLDKAM KEATEFGNSQ SQKENAEALE EMKKSGKTEI ITLTPEQNLA
MRKAMAPVYD DVGGRVGKAL IEEFIKESGG GPTK
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