| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2019 |
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| Symbol | |
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| ID | 6409679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2189375 |
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| End bp | 2191603 |
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| Gene Length | 2229 bp |
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| Protein Length | 742 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642711905 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001991017 |
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| Protein GI | 192290412 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.850916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCCG CATTCCCGCG GTCGCGCAGG CATTTGCTTG TGCATGCCAC CGCGCTCGTC
TCCACTTGCC TCGTCGTTCT TCCTGCTGCG GCGCAAAGCC GTTCTTCCGA TAGCTCTCTG
CCGCCGGTCA CCGTGCAGGC GCCCGATCAA GCCGCGCGAC CGGCGCCGGT GCGTCCGAAG
CCGCGCGCAG CATCGCAGTC CACGCGCGCG GTGCGCAGCG CCGCCCCGGC TGCGCAGCCG
TCCGCTGCGC CGGCTGCAAG CGAGGTCGCG CGCGGTCCTG CACTGACAGT GCTCACCGCG
CAGCAGGCGC TGCGCGACAT CGAACAGACG CCGGGTGGCG TCGCGCTGGT GCCGGCCAAC
GCCTATCGCA ACTCGACGGT GTCCAACACC ATCAAGGACA TTCTCGACTA CGTGCCCGGC
GTGTTCGCGC AGCCGAAATG GGGCGACGAC ACCCGGCTGT CGATCCGCGG TTCCGGCCTG
TCGCGCAATT TCCACCTGCG CGGTGTGCAG CTCTACATGG ACGGCATTCC GATCAACACC
GCCGATGGCT ACGGCGATTT CCAGGAGATC GATCCGACCG CCTACAACTA CGTCTCGGTG
TACAAGGGCG CCAACGCGCT GCAGTTCGGC GCCAATTCGC TCGGCGGCGC GATCAACTTC
GTCACCAAAA CGGGACGCGA TCCGTTCCCG AACGGCGTCA GCGTCGATGC CGGCGCGTTC
GGCTATCGCC GGCTGCAGGC CAATGCCGGC GGCGTCAACG GTGCCTGGGA CGGCTACATC
ACAGCCTCGG CGCAAGCCGC GGACGGCTTC CGCAATCACA GCGATGGTCA GGCATACCGG
CTCAGCGGCA ATGTCGGCTA TCAGATCACG CCCGATATCG AGACGCGGTT CTATCTCAAC
GCCAACAGCG TCCGGCAGAA AATCCCCGGC AGCGTCACCA AGGACGTCGC GCTGAATTCG
CCGCAGACCG CAGCGGCCAA TAACATCGCG CTCGATCAGC AGCGCAATAT CGACACCGTG
CGGCTCGCCA ACAAGACCAC GATCCGGTTC GAGGACACTG TGGTCGATTT CGGCGCCTTC
GGCGTCGACC GCCATCTGAT GCATCCGATC TTCCAGTGGC TCGACTATCG CTACCAGGAC
TACGGCGGCT TCGCCAAAGT CACCGACGAT CGCATCATCG GCGGTTATCG CAATCGTCTG
GTCGCCGGCG TCAATCTGCT GAACGGCCGG ATCGACAACA AGCAGTACGT CAACGTCGCC
GGCAACAAGG GCGCGCTGGC GTCGTCGTCG CTCGACAAGT CGACCAACAC CAGCGTCTAC
ATCGAGGACT CGTTCTACTT CCTGCAGAAC GTCGCCCTGG TCGGCGGAAC GCAATTCCTG
CACGCCACCC GCGACCGCCG CGATCGCTTC CTGTCGGACG GCGATCAATC CGGCTCGACC
GAGTTCAATC TGTGGAGCCC GAAGGGCGGC CTGCTGTGGC AGATCGATCC GAACTGGCAG
GCATTCGCCA ACGTCTCGCG CAGCGCCGAG GTGCCGAGCT TCGGCGAGAG CGCATCGGGA
CCTGGGATTC CGTTCATCCC GTTCACCAGC ATCCGGCCGC AGCGTGCCAC GACTTATGAG
ATCGGCACCC GCGGCCGGCG ACCAGACGTA ACTTGGGATC TCAGCCTGTA CCGGGCCGAG
ATCAAGGACG AACTGCTGTG TCTGTACAGC GCGTTCGGCA ATTGCAACGT CACCAACGCC
GACCGCACCA TGCACCAAGG CGTCGAAGCG GGGCTCGGCG TGACGCTGTT CAAGCACCTG
TTCGAGCGCG CCGGCGCGCC GGATCGGCTG TGGCTGAACA TGGCCTACAC GCTGAACGAC
TTCCGCTTCG ACGGCGATGC CAAGTTCGGC AACAATCTGC TGCCCGGTGC GCCGCGGCAT
TATCTGCGCG CCGAGCTGCT CTACACGAAT CCGAACGGCT TCTATATGGG GCCGAACGTC
GAATGGGTGC CGCAGGCTTA CTACGTCGAC AGCGCCAATA CGCTTCAGAC CGAGCCTTAC
GCACTGCTCG GCCTCAAAGC GGGTATCGAT AATGGCGGGC CGTATTCGAT CTATATCGAA
GGCCGCAACC TGCTCGACAA GACCTACATC GCCTCGGCAA GCATCATCGA CAAGGCGAAC
GCCAACTCGC CGCTGTTCGA ACCCGGCACT GGGCGCGCCG TCTATGCCGG CTTCAAGGCG
CGGTGGTAG
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| Protein sequence | MSSAFPRSRR HLLVHATALV STCLVVLPAA AQSRSSDSSL PPVTVQAPDQ AARPAPVRPK
PRAASQSTRA VRSAAPAAQP SAAPAASEVA RGPALTVLTA QQALRDIEQT PGGVALVPAN
AYRNSTVSNT IKDILDYVPG VFAQPKWGDD TRLSIRGSGL SRNFHLRGVQ LYMDGIPINT
ADGYGDFQEI DPTAYNYVSV YKGANALQFG ANSLGGAINF VTKTGRDPFP NGVSVDAGAF
GYRRLQANAG GVNGAWDGYI TASAQAADGF RNHSDGQAYR LSGNVGYQIT PDIETRFYLN
ANSVRQKIPG SVTKDVALNS PQTAAANNIA LDQQRNIDTV RLANKTTIRF EDTVVDFGAF
GVDRHLMHPI FQWLDYRYQD YGGFAKVTDD RIIGGYRNRL VAGVNLLNGR IDNKQYVNVA
GNKGALASSS LDKSTNTSVY IEDSFYFLQN VALVGGTQFL HATRDRRDRF LSDGDQSGST
EFNLWSPKGG LLWQIDPNWQ AFANVSRSAE VPSFGESASG PGIPFIPFTS IRPQRATTYE
IGTRGRRPDV TWDLSLYRAE IKDELLCLYS AFGNCNVTNA DRTMHQGVEA GLGVTLFKHL
FERAGAPDRL WLNMAYTLND FRFDGDAKFG NNLLPGAPRH YLRAELLYTN PNGFYMGPNV
EWVPQAYYVD SANTLQTEPY ALLGLKAGID NGGPYSIYIE GRNLLDKTYI ASASIIDKAN
ANSPLFEPGT GRAVYAGFKA RW
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