| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2001 |
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| Symbol | |
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| ID | 6409661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2164920 |
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| End bp | 2166155 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642711887 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_001990999 |
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| Protein GI | 192290394 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCCC TGTCCCGTTC GATCGCCGCC GTCGCGGCCG TCGCGCTGCT GTCCGCCACC
GGCGGGCAAG CGCTGGCGCA AAAGAAATAC GGCCCCGGTG CGAGCGACAC CGAAGTCAAG
ATCGGCAACA TCGTGCCGTA TTCCGGCCCC GCCTCGGCCT ATGGCAGCGT CGGCCGGGCG
CAGGAAGCCT ACTTCAAGAT GATCAATGAC AAGGGCGGCA TCAACGGCCG CAAGATCGTC
TACGTGTCAT ATGACGACGC CTATTCGCCG CCGAAGGCCG TCGAGCAGAC CCGCAAGCTG
GTCGAGAGCG ACGAAGTGCT GTTCATGTTC TCGCCGCTCG GAACGCCGTC CAACACCGCG
ATCCAGAAGT ATCTCAACGC CAAGAAGGTG CCGCATCTGT TCCTGGCGTC GGGCGCCACC
AAGTGGAACG ATCCGAAGCA CTTCCCGTGG ACGATGGGCT GGCTGCCGAG CTACCAGAGC
GAAGGTCGAA TCTACGCCAA GTACATCTTG AAGGAGAAGC CGGACGCCAA GATCGCCGTG
CTGTATCAGG GCGACGACTT CGGCAAGGAC TATCTGAAGG GCCTCAAGGA CGGTCTCGGT
GCCAAGGTGT CGCAGGTCGT GATCGAGGAC AGCTACGAGC TGACCGAGCC GACCGTCGAC
TCCCACATCG TCAAGATCAA GGCCGCGAAC CCGGACGTGC TGGTGATCTT CGCCACGCCG
AAGTTCGCCG CGCAGACCAT CAAGAAGGTC GCCGAGCTCG CCTGGAAGCC GATGATGATC
GTGCCAAACG TCTCGGCCTC CACCGGCAGC GTGATGAAGC CGGCCGGCTT CGAAAACGCG
CAGGGCATCG TCTCGGCCGC CTACGCCAAG GACGCCACTG ACAAGCAGTG GGAAAATGAC
CCGGGCATGA AGGCGTATTA CGAGTTCATG GCCAAGTACG CGCCGGACGC CAGCCGCGCA
GACAGCTCGT TCACCACCGG CTACAACATC GCCGAGACCG TGGCGGTGCT GATCAAGCAG
TGCGGCGACG ACCTCAGCCG TGAGAACGTG ATGAAGCAGG CGGCGAACCT CAAGGGCGTG
CAGCTCGGCG GCCTGCTGCC GGGCGTAACG CTGAACACCT CGCCTACCGA CTTCGCGCCG
ATCGAGCAGC TGCAGATGAT GCGGTTCGAA GGCGAAAACT GGAAGCTGTT CGGCGACGTG
ATCGAAGGCG AAGTCGCCGC GCCGAGCGGC GGCTAG
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| Protein sequence | MSSLSRSIAA VAAVALLSAT GGQALAQKKY GPGASDTEVK IGNIVPYSGP ASAYGSVGRA
QEAYFKMIND KGGINGRKIV YVSYDDAYSP PKAVEQTRKL VESDEVLFMF SPLGTPSNTA
IQKYLNAKKV PHLFLASGAT KWNDPKHFPW TMGWLPSYQS EGRIYAKYIL KEKPDAKIAV
LYQGDDFGKD YLKGLKDGLG AKVSQVVIED SYELTEPTVD SHIVKIKAAN PDVLVIFATP
KFAAQTIKKV AELAWKPMMI VPNVSASTGS VMKPAGFENA QGIVSAAYAK DATDKQWEND
PGMKAYYEFM AKYAPDASRA DSSFTTGYNI AETVAVLIKQ CGDDLSRENV MKQAANLKGV
QLGGLLPGVT LNTSPTDFAP IEQLQMMRFE GENWKLFGDV IEGEVAAPSG G
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