| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1972 |
|---|
| Symbol | |
|---|
| ID | 6409632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2131054 |
|---|
| End bp | 2133864 |
|---|
| Gene Length | 2811 bp |
|---|
| Protein Length | 936 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642711858 |
|---|
| Product | phosphoenolpyruvate carboxylase |
|---|
| Protein accession | YP_001990970 |
|---|
| Protein GI | 192290365 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2352] Phosphoenolpyruvate carboxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCGC TGAATCTGTC CGCCGGCCCC GAGCCGGTCT CCGAACGTCC TGACGACGCT
GCCGCGATCG AGGCCGAGAC CCGGCTGCGC AACGACATCC GGCTGCTCGG CCGCATTCTC
GGCGATACCG TGCGCGAGCA GGAAGGCCAG AGCGTGTTCG ATCTGGTCGA GAACATCCGC
CAGACCTCGA TCCGCTTCCA TCGCGATGAC GACAAGACCG CGCGCGCCGA GCTCGCCGCC
ATTCTCGACG GCATGTCGAT CCAGGACACG ATGCGGATCG TTCGCGCCTT CAGCTATTTC
TCGCACCTCG CCAACATCGC CGAGGACCAG AACAACATCC GCCAGATGCG CGCCGGCTCG
ACCGCCGGCT CGGCGCCGCG CGCCGGCCTG CTCGCCAAGA CTCTGGCGCA CGCGCGGCAG
GAGGGCATCA GCGCCGCGGA GCTGCGCAAG TTCTTTGCGA CCGCGCTGGT CAGTCCGGTG
CTGACCGCGC ATCCGACCGA GGTGCGCCGC AAGAGCACGA TGGACCGCGA GATGCAGATC
GCAGGATTGC TCGATCAGCG CGACCGCGTT CAGCTCACCG CCGACGAATG GGCCGACAAC
GAGGAGTGGC TGCGCCGCGC CGTCGAGACG CTGTGGAAGA CCAACCTGCT GCGCCGGACC
AAGCTGACGG TGCTGGACGA AGTCACCAAT GGGCTGTCGT TCTACGACTA CACCTTCCTG
CGCGAGGTGC CACGGCTGCA CAGCGCGCTG GAGGACCGGC TCGCCGATGC GGCGAAAGCC
GAAGGCGCCA ACGCCGAGGG CGAACTCGCC AGCTTCCTGC GGATGGGAAG CTGGATCGGC
GGCGACCGCG ATGGCAATCC GTTCGTCACC GCCGAGGTGC TGCACGGCAC CTTGAAGCTG
CAGAGCACGC GGGTGCTGCG CTATTATCTC GAGGAGCTGC ACGAGCTCGG CTCGGAATTG
TCACTGGCCT CGCATCTCGC CGGCACCACC GACACCGTCA AGGCGCTGGC CGAAACTTCG
CCCGACACTT CGCCGCATCG CAAATACGAG CCGTATCGGC TCGCGGTGTC CGGCATCTAT
GCGCGGCTGG CTGCCACGGC GCTCAAGCTC GAGGTCGAGA ACCTCCGCAC ACCGGTCGGC
GAGGCCGAGC CCTATGCCAG CGCGCAAGAC TTCAAGACCG ATCTTGACGC CATCCATCTT
TCCCTGACCA CGCATCATTC CGGCGTGATC GCACGCGGTC GGCTGCGCCA GCTCCGTCGT
GCAATCGACT GTTTCGGATT CCACCTCGCC AGCCTCGACA TGCGGCAGAA CTCGGCGGTG
CATGAGCGCA CCGTCGGCGA GCTGATGGAC GCGGCCCGGC CGGGTACGTC CTACGCGGTG
CTCGACGAGG AAGCGCGGAT CGCGCTGCTG ATCAGCGAGT TGCGCAGTAC CCGGCCGCTG
ACCTCGATGT TCGTCAAATA CAGCGACGAG ACGGTCGGCG AGCTTGCGGT GTTCCGCGAA
GCGGCGAAGG CCCATGCGAC CTACGGGGCG GCGGCGATCC CCCAATGCAT CATTTCGATG
ACCAAGGGCG TCTCGGATCT CTTGGAGGTC GCGGTGCTGC TCAAGGAAGT CGGGTTGATC
GATCCGTCCG GGCGCAGCGC CATCAACGTC GTGCCGCTGT TCGAGACCAT CGAGGATCTG
CAGGCCTGCG CCAAGATCAT GGACCGGCTG CTGTCGATCC CCGAATATCG CCGCCTGGTC
GACAGCCGCG GCTCGGTGCA GGAGGTGATG CTCGGCTACT CCGACAGCAA TAAGGACGGC
GGCTTCGTCA CCTCAGGCTG GGAGCTGTAC AAGGCCGAGA TCGGTCTGAT CGAGATCTTC
GAGCACCACG GCGTTCGGCT GCGGCTGTTC CACGGCCGTG GCGGCTCGGT CGGCCGCGGC
GGCGGCCCGA GCTACGATGC GATCGTGGCG CAGCCGGGTG GTGCGGTGAA CGGCCAGATC
CGCATCACCG AGCAGGGCGA GATCATCACC AGTAAATATT CCAACGTCGA AGTCGGCCGC
AACAATCTCG AGATCCTCGC CGCCGCGACG CTGGAAGCGA GCCTGCTGCA GCCGAAGCGC
GTGGCGCCGC ACCGCGATTA TCTCGAAGCG ATGGAGCAGC TCTCGGCATT GGCCTTCAAG
GCGTATCGCG GCCTGGTGTA CGAGACCGAC GGCTTCGTCG ATTACTTCTG GGCCTCGACG
GTGATCAATG AGATTTCGAC GCTGAACATC GGCAGCCGCC CGGCCTCGCG CAAGAAGACC
CGCGCGATCG AGGACCTGCG CGCGATCCCA TGGGTGTTCT CGTGGGCGCA GTGCCGGCTG
ATGCTGCCGG GCTGGTATGG CTTCGGCAGC GCGGTGTCGG CCTGGGTCAC TGAGCACCCC
GACAAGGGCA TCGCCTTTCT GCAGGCGATG TATCAGGAGT GGCCGTTCTT CCGTACGCTC
TTGTCGAATA TGGACATGGT GCTGTCGAAG AGCTCGATCG GCATCGCCTC GCGCTATGCG
GAGCTGGTCG AAGACACCGC GATCCGCGAC CGCATCTTCG GCCGCATCCG CGCCGAATGG
CATTCGTCGA TCGACTATCT CCTGGCGATC ATGCAGCAGG ACCATTTGCT GCAGAGCAAC
CCATTGCTCG AACGCTCGAT CCGCCACCGC TTCCCGTATC TCGATCCGCT GAACCACGTC
CAGGTCCAGC TGCTGCGCGA ACATCGTACC CATGATCCGG ACGAGCAGGT GCTGCGCGGC
GTGCAACTGA CGATCAACGG GATTTCCGCG GGGCTGCGGA ATAGCGGGTG A
|
|---|
| Protein sequence | MSSLNLSAGP EPVSERPDDA AAIEAETRLR NDIRLLGRIL GDTVREQEGQ SVFDLVENIR
QTSIRFHRDD DKTARAELAA ILDGMSIQDT MRIVRAFSYF SHLANIAEDQ NNIRQMRAGS
TAGSAPRAGL LAKTLAHARQ EGISAAELRK FFATALVSPV LTAHPTEVRR KSTMDREMQI
AGLLDQRDRV QLTADEWADN EEWLRRAVET LWKTNLLRRT KLTVLDEVTN GLSFYDYTFL
REVPRLHSAL EDRLADAAKA EGANAEGELA SFLRMGSWIG GDRDGNPFVT AEVLHGTLKL
QSTRVLRYYL EELHELGSEL SLASHLAGTT DTVKALAETS PDTSPHRKYE PYRLAVSGIY
ARLAATALKL EVENLRTPVG EAEPYASAQD FKTDLDAIHL SLTTHHSGVI ARGRLRQLRR
AIDCFGFHLA SLDMRQNSAV HERTVGELMD AARPGTSYAV LDEEARIALL ISELRSTRPL
TSMFVKYSDE TVGELAVFRE AAKAHATYGA AAIPQCIISM TKGVSDLLEV AVLLKEVGLI
DPSGRSAINV VPLFETIEDL QACAKIMDRL LSIPEYRRLV DSRGSVQEVM LGYSDSNKDG
GFVTSGWELY KAEIGLIEIF EHHGVRLRLF HGRGGSVGRG GGPSYDAIVA QPGGAVNGQI
RITEQGEIIT SKYSNVEVGR NNLEILAAAT LEASLLQPKR VAPHRDYLEA MEQLSALAFK
AYRGLVYETD GFVDYFWAST VINEISTLNI GSRPASRKKT RAIEDLRAIP WVFSWAQCRL
MLPGWYGFGS AVSAWVTEHP DKGIAFLQAM YQEWPFFRTL LSNMDMVLSK SSIGIASRYA
ELVEDTAIRD RIFGRIRAEW HSSIDYLLAI MQQDHLLQSN PLLERSIRHR FPYLDPLNHV
QVQLLREHRT HDPDEQVLRG VQLTINGISA GLRNSG
|
|---|
| |