| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1881 |
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| Symbol | |
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| ID | 6409540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2024496 |
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| End bp | 2029094 |
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| Gene Length | 4599 bp |
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| Protein Length | 1532 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711769 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_001990882 |
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| Protein GI | 192290277 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGTACA AGCGAACACG GTCGACTGAC ATCCAGGTGT TGCTGGCAGG CGGCAGTCGG
GTCGGTGCAC GGAGCATTGC GGCGCTGAGT GCGGCGCTGT TGCGCGCGAT CACAGTCATG
ACGACCCTGA CAGTCCCGGC GATGGCCGAC GGCGGTGCCG GCGGACAAGG CGGCGACTCC
TCCGCCGCCG GTGGGATCGG CGGCTCTGGC TATGTCGGAG CGAGCGGTGG TAGCTCGGGA
CCGAGCACGA CCGCGGGGTC GGGCGGCGGC GGCGGCGGTG CGGCCGGCGG CGGGAGCGGT
GGCTCCAGCG GCAATACAGA CAGTGTCGGA GGTGCTGCGG GCGGCACCAC GCCGGGGCAA
GACGGCAGCA ATGGCACGAC GGCGGCCTCC CCCAGCGGAG GTGGAGGAGG CGCCGGCGGC
AACAATGGCA ACGTGGCCAC TGCTCCCTTC AGCAATGCGG CAAACTCCAC CGGCCAAAAT
GGTGGCAAAG GCGGCAACGG CGGTGCAGGC ACAGATTCAG GCTCCACCGG GGGTGGTGGC
GGCGGCGGCG GCGCGGGGGG CGTTGGTTTC GTCTTTTCGG ACAGCAGTTC CTTCACCAAT
TTCAATGTGA CGATTCAAGG CGGCGCCGGC GGCAATGGCG GTGCCGGGGG ATCTGCGGCT
GCGGCAAACG GCAATGGCGG CGCGGGCGGA GACGGCGGGA CCGGCCTTCT ATTGACCTCA
CCGGGGGCGA CGGTCACCAA CAGCGGCACC ATCAAAGGTG GCAATGGTGG CGCCGCAGGC
GCAGCAGGCG CCGGAACGGG CACCGCCGGG GCGGCGGGGG CCGCTGGCGC GGGCGGCACT
GGGATCGTCG GCTCCGGCCT GACCATTATC AACTCCGGGT CGATTCAGGG CGGCCTCTCC
GGCGACGGAA CGCGAGCGAA CTCGATTACA TTTACGGGCG GCAACAATAC GCTGACGTTC
ATGAACGCGG GGGCGGGCCT TACCGGTGCG ATCGGTCTCG CGACCAGCAG CACCACCCTC
ACGTTCGCAC AGTCGACCAA CTCGACCCTC GACCAGATGA TCACAGGAGC GGGCTCCGTC
ACAAAGGCGG GCCCTGGCGT GCTGACGCTC ACCGGCCTCA ACACCTACGC GGGCGGCACC
ATCATTGCGG CTGGCACGCT GCAGATCGGC GACGGCGGCA CGACCGGATC GATCACTGGC
AGGGTGGCTA ACGGCAGCGC GCTGTCGTTT AATCGCTCAG ATACCTACAC GCTCGATGGC
GTAATCTCAG GTAGTGGACG TGTGAACCAG CTCGGTCCAG GGACGACGGT CCTCACGGGC
AACAACAACT ACAGTGGCGG GACCACCATT TCGGCTGGCA CGCTGCAGGT CGGCAACGGT
GGCACCACCG GAACGATCGG CAGCGGAAAC GTCAATAACG CCGGTATTTT GGCGTTCAAT
CGCTCCAATG CTCTCAATTT TGTTCCTGTG ATCTCTGGCG CCGGCGCGGT CACTCAACTT
GGATCCGGCA ACCTGACGCT GTCGGGTACT AACACCTACA CCGGCGGAAC GACGATCAGC
AGTGGCACTG TCACAGCCAC CACCAACCGC GCCTTGGGCA CCGGCGATGT GAGGATGATG
CAGGGCGCGA CCTTGGTGCT CCCGTTCAAC TCTACCCTCG CCAATAATTT CATCATCAGT
GGCACCTCTA TTCTCAAGGT GGAGTCTGGC ACCACCCGGA TTACAGGCGT CCTCTCCGAC
GGGCCCATCG CAGGGAGCAT CGAAAAGACA GGCGGTGGTG TGATTTCCCT CACCGGCAAC
AACACTTACA CGGGGGGGAT CACTATCTCG GCCGGCGCGT TGGATATCGG CGCCAATGGC
TCCACCGGAT CGATCACCGG CGATGTTATC AATAACGGCT CTCTGCGGTT CAAACGTTCG
GACGCCTACA CGTTCGGCGG CGCTATCTCT GGTAGGGGAG CAATACTCCA GGACGGCGAC
GGCGTAACGA TCCTAACTGG CACCAACACT TATACCGGCA CCACGGCCAT TTCGCGCGGC
AAGCTGCAGA TCGGCGATGG CGGCACGACC GGATCGATCA CCGGCGGGGT GACCAACAAC
AGCGAGCTGT GGTTCAATCG CTCAGATACC TACACGTTCG GTGGCGTAAT CTCGGGTAGT
GGACGTGTGA GCCAGCTCGG TCCAGGGACG ACGGTCCTCA CGGGCAAAAG CACCTACACG
GGCGGCACAA CCATTTCGGC TGGCACGCTG CAGATCGGCA ACGGTGGCAC CACCGGCAGT
ATCGCCAACA ATGTCAATAA CGCCGGCACT TTGGCGTTCA ATCGCTCAGA TGCCTACACG
TTCGGCGGCG CGATCTCCGG CACCGGCTCG GTCTCTCAAC TGGGATCCGG CAATCTGACA
CTGTCGGGCG CCAACACCTA CATCGGCGGA ACGACGATCA GCGGCGGCAC TGTCACGGTC
GGCAACAACA GCGCTTTTGG CACCGGCGAT GTGAAGACGA CGCAGGGCGC GACGGTGGCG
TTCGGCGCCG CCGACTACAC CCTCGCCAAC AATTTTGTGG TCAGCGGCAC CTCCATTTTC
GATATCCAGA CTGGCACCAC CCAGACCATT ACGGGCGCTG TCTCCGACGG AGACACCGCA
GGGATCATCC AAAAGAATGG CGACGGTAAG CTGATCTTGA GCGGTCCCAC TTCCTATTCG
GGCGGCACCA TCATCAACGC CGGGACACTG CAACTGGCGA ACAGCAACAT GCTGTCGGCG
ACCACCGCGG CGACGGTCGC CTCAGGGACC ACTCTCGATC TCGGCGGCTT CAATCAGACC
ATTGGTTCGT TGGCGGGAGC TGGATCGGTC GCGCTCGGTG CGGCGCTGCT CACGACGGGG
GCGGACAACA GCTCGACGAA TTATTCCGGA ACGATGTCGG GGACCGGGGG GCTGACCAAG
CAGGGGACCG GAAACCTCAT TCTCTCCGGC ACCAATGATT ACACCGGGCC GACCACGGTC
AATGCCGGCA CATTGTCGGT GAACGGGTCG ATCGCTTCGG CGGTGACCGC GGCGAGCGGC
GGCCGGCTCG GCGGCTCAGG CAGCGTCGGT TCGACGACGA TTGCATCAGG CGGGACGCTG
GCGCCCGGCA ATTCGATCGG AACTCTGACG GTCAATGGCG ATCTGACCCT CGCGGCCGGC
TCGAGCTATG CGGTCGAGGT GTCGCCGACG GCGTCGGATC GCACCAACCT CACGGGGCGT
GCCACACTCG CCGGAACCGT GCAGGCGAGC TACGCGACCG GGAGTTACAT CTCCAAGCGC
TACACCATCG TCAATGCGAG CGGCGGCGTC GCCGGAACAT TCGGTGCGCT TGTCGACACC
AATCTGCCTG CCAACTTCAG ATCGGCGCTG GCCTACGATG CCAACAATGC CTACCTCGAT
CTGATGCTGG CGTTCGTTCC TCCCACTGCG CCGGACTACG GCAATGGGTT GAGCCGCAAT
CAACAGCAGG TCGCTGGTGC GCTGGTCAAT TCGTTCAACG TCGCCGGTGG AATCCCGACC
ACGCTGGGCA CTTTGAGGCC GGACGGGCTG AGCCAGGCTT CCGGCGAAGC CGTAGCCGCG
CTGCAGCAGT CGTTGTTCGG CTCGGCCGAT CTGTTCATGC GCAGCGTGTT CAGCAACGCG
CTCGACCCGA CGGACGGCTC CGCTGGGCGG GAGTGCGCGG CGCCTGGGTC CCAAGCCGGA
CCGCGCGACG CGTGCGCGGC GCTGCCTCCC GCGGCCGCCT CGGCGTCGCG CTGGAGCGTC
TGGGGCGCGG GATACGGCGG CACGCTGCGC GTCGGTGGCG ATGCGTCCAC CGGCTCGCAC
GACACCACCA GCCGAGTTGC CGGTGCTGCC GCGGGCGCAA GCTATCAGGT GTCGCCGCAG
GCCCGTGTCG GTTTCGCGCT GGGTGGTTCC GGTTCGAGCT TCAGCCTCGC GCAAGGCCTC
GGCTCCGGCA GCTCAGACAG CTTCAACGCC GCGCTCTACG GTCGCTATCA GCTCGGCCCG
TCATATTTGG CGGCGGCGCT CGGCTATGTA TGGCAGGACG CCACTGTCGA TCGGACAGTG
ACGGTTGCCG GCGGGGAGGC GCTGCGCGCC CGGATGCATC CGCAGGCTCT GACGGCGCGG
GTCGAGGGCG GTCAGCGCCG GCAGGTCAGC GGCATCGGTG TCACGCCTTA TGCGGCGCTG
CAGACCACCA CAATGTTCCT GCCGACCTTT GGCGAGACCG GAACGAGTGT GTTCGCGCTC
GACTACGCCG GGCGCCAGTC GACGGTGACG CGCAGCGAAC TCGGGGCTCG CTTCGACGAC
GAGGTCTTCA TCGATGGACG GCCGCTGGCG CTGAGAGCGC GGGCCGCCTG GGCTCACGGC
TGGAACACGG ACTGGCAGGC GGCGGCCACG TTGCGGCAAA TCCCGGCCGC GCAGTTCAAC
GTCTATGGCG CGGCGCTGCC CGGCGATTCC GTCCAGGTTT CGCTGGGAGC AAGTCTGGGA
CTTGGTCGCG GCTGGACCGT CTCGGCGGCA TTTGACGGTG AGTTCTGGAA GCACGCCGAG
AGCTACGCCG GCCGCGCGCT CGTCAGCTAC CAGTGGTGA
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| Protein sequence | MAYKRTRSTD IQVLLAGGSR VGARSIAALS AALLRAITVM TTLTVPAMAD GGAGGQGGDS
SAAGGIGGSG YVGASGGSSG PSTTAGSGGG GGGAAGGGSG GSSGNTDSVG GAAGGTTPGQ
DGSNGTTAAS PSGGGGGAGG NNGNVATAPF SNAANSTGQN GGKGGNGGAG TDSGSTGGGG
GGGGAGGVGF VFSDSSSFTN FNVTIQGGAG GNGGAGGSAA AANGNGGAGG DGGTGLLLTS
PGATVTNSGT IKGGNGGAAG AAGAGTGTAG AAGAAGAGGT GIVGSGLTII NSGSIQGGLS
GDGTRANSIT FTGGNNTLTF MNAGAGLTGA IGLATSSTTL TFAQSTNSTL DQMITGAGSV
TKAGPGVLTL TGLNTYAGGT IIAAGTLQIG DGGTTGSITG RVANGSALSF NRSDTYTLDG
VISGSGRVNQ LGPGTTVLTG NNNYSGGTTI SAGTLQVGNG GTTGTIGSGN VNNAGILAFN
RSNALNFVPV ISGAGAVTQL GSGNLTLSGT NTYTGGTTIS SGTVTATTNR ALGTGDVRMM
QGATLVLPFN STLANNFIIS GTSILKVESG TTRITGVLSD GPIAGSIEKT GGGVISLTGN
NTYTGGITIS AGALDIGANG STGSITGDVI NNGSLRFKRS DAYTFGGAIS GRGAILQDGD
GVTILTGTNT YTGTTAISRG KLQIGDGGTT GSITGGVTNN SELWFNRSDT YTFGGVISGS
GRVSQLGPGT TVLTGKSTYT GGTTISAGTL QIGNGGTTGS IANNVNNAGT LAFNRSDAYT
FGGAISGTGS VSQLGSGNLT LSGANTYIGG TTISGGTVTV GNNSAFGTGD VKTTQGATVA
FGAADYTLAN NFVVSGTSIF DIQTGTTQTI TGAVSDGDTA GIIQKNGDGK LILSGPTSYS
GGTIINAGTL QLANSNMLSA TTAATVASGT TLDLGGFNQT IGSLAGAGSV ALGAALLTTG
ADNSSTNYSG TMSGTGGLTK QGTGNLILSG TNDYTGPTTV NAGTLSVNGS IASAVTAASG
GRLGGSGSVG STTIASGGTL APGNSIGTLT VNGDLTLAAG SSYAVEVSPT ASDRTNLTGR
ATLAGTVQAS YATGSYISKR YTIVNASGGV AGTFGALVDT NLPANFRSAL AYDANNAYLD
LMLAFVPPTA PDYGNGLSRN QQQVAGALVN SFNVAGGIPT TLGTLRPDGL SQASGEAVAA
LQQSLFGSAD LFMRSVFSNA LDPTDGSAGR ECAAPGSQAG PRDACAALPP AAASASRWSV
WGAGYGGTLR VGGDASTGSH DTTSRVAGAA AGASYQVSPQ ARVGFALGGS GSSFSLAQGL
GSGSSDSFNA ALYGRYQLGP SYLAAALGYV WQDATVDRTV TVAGGEALRA RMHPQALTAR
VEGGQRRQVS GIGVTPYAAL QTTTMFLPTF GETGTSVFAL DYAGRQSTVT RSELGARFDD
EVFIDGRPLA LRARAAWAHG WNTDWQAAAT LRQIPAAQFN VYGAALPGDS VQVSLGASLG
LGRGWTVSAA FDGEFWKHAE SYAGRALVSY QW
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