| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1879 |
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| Symbol | |
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| ID | 6409538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2022359 |
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| End bp | 2023141 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642711767 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990880 |
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| Protein GI | 192290275 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGATCTGG GAATCAAGGG CCGCCGCGCG CTGGTGTGCG CATCGAGCAA GGGACTGGGC
CGCGGCTGCG CTGCGGCGCT CGCCGCCGAA GGCGTGCATG TGACGATGAC TGCACGCGGC
GCCGAAGCGC TGGCGCAGGC CGCGGCGGAG CTGCGCAAGG CCTATCCCGA TGTCGAGATC
ATCGAGGTCG CCGGCGACAT CACCACGCCG GAAGGCCGCG CCGCCGCGCT GGCGGCCTGC
CCGGAGCCGG ACATCCTGAT CAACAATGCC GGCGGCCCGC CGCCCGGCGA TTTCCGCAAC
TGGACCCGCG ACGACTGGAT CAAGGCGCTC GACGCCAACA TGCTGACGCC GATCGAACTG
ATCAAGGCGA CGGTCGACAA GATGATCGAG CGCAAGTTCG GCCGCATCGT CAACATCACC
TCGGCCGCCG TGAAAGCTCC GATCGACGTG CTCGGCCTGT CGAACGGCGC ACGCTCCGGT
CTGACCGGCT TCGTCGCCGG CCTGTCGCGC AAGACCGTTC GTCACAACGT GACGATCAAT
GCGCTGCTGC CCGGCCCGTT CGACACCGAT CGGCTGCGCG GCGTCGCCGC CGGTCAGGCC
AAGGCGTCCG GCAAGCCGGC CGAGCAGATC CTGGAAGCGC GGAAGAATGA AAACCCGGCG
GGACGCTTCG GCACGCCGGA TGAATTCGGC GCCGCCTGTG CGTTCCTGTG CAGCGTCCAC
GCCGGCTACA TCACCGGCCA GAACCTGCTG CTCGACGGCG GCGCGTTCCC GGGCACGATG
TAA
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| Protein sequence | MDLGIKGRRA LVCASSKGLG RGCAAALAAE GVHVTMTARG AEALAQAAAE LRKAYPDVEI
IEVAGDITTP EGRAAALAAC PEPDILINNA GGPPPGDFRN WTRDDWIKAL DANMLTPIEL
IKATVDKMIE RKFGRIVNIT SAAVKAPIDV LGLSNGARSG LTGFVAGLSR KTVRHNVTIN
ALLPGPFDTD RLRGVAAGQA KASGKPAEQI LEARKNENPA GRFGTPDEFG AACAFLCSVH
AGYITGQNLL LDGGAFPGTM
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