| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1872 |
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| Symbol | |
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| ID | 6409531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2012593 |
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| End bp | 2015406 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711760 |
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| Product | CheA signal transduction histidine kinase |
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| Protein accession | YP_001990873 |
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| Protein GI | 192290268 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.134352 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGATC TTCTTCGTGA GTTTTTGACG GAGACCTTCG AGAGCCTGGA CACGGTTGAC
AACCAGTTGG TCCGGTTTGA GCAGGAGCCG AACAACGCGA AGATATTGGA CAATATTTTT
CGTCTTGTTC ACACCATCAA GGGAACGTGC GGGTTTCTAG GGTTGCCGCG GCTTGAAGCG
CTTGCGCACG CGGCCGAGAC CCTGATGGGC AAATTCCGGG ACGGAATGCC GGTGACGGGG
GAGGCGGTGA CGCTGATCCT GACCACGATC GACCGGATCA AGGACATTCT GACCCAGCTG
GAGGCGACCC AGGCCGAGCC CGAGGGCGAG GACGGCGACC TGATCGGGGA GCTGGAGCGG
CTGTCGATGC GCTCGCCGGA AGAGATCGCG GCCGAGCTCG GCGGCGCTGC GCCGGTGGAG
GTTGCCGAAG TCGAAGCCCC TGCCGAAGCT GTTGTGGCCG AGACGGCCGA CGCCAATTCG
ACCGAAGGCA CCCTGGTGGC GCAGACGCTG GAGCGTCCGC TGCGGCCGGG TGAAGTGTCG
CTGGACGAGC TTGAGCGCGC CTTCCGCGAG ACCGAGATCG AGATGGCCTC GCCGCCGCTG
CAGCCCGCCG TGAGCGAAGC TCCGGCTGCT GTGGCTGAAG CCGCGCCGCC TGAACCGAAG
CCGGCCAAGC CCGCCAAACC GGCCGCCAAG CCGGCGGCGA AGAAGTCCGG CGGCGAAGGC
GAGGGCGCAG CTGAAGGTGG GGCCGCTGGC GGCGTCGCCA ACCAGTCGAT CCGCGTCAAC
GTCGATACCC TCGAACACCT GATGACGATG GTGTCGGAGC TGGTGCTGAC CCGTAACCAG
CTGCTCGAGA TCAGCCGCCG CCACGAGGAC AACGAGTTCA AGGTGCCGCT GCAGCGGCTC
TCCACCGTCA CCGCCGAGCT GCAGGACGGG GTGATGAAGA CCCGGATGCA GCCGATCGGC
AACGCCTGGC AGAAGCTGCC GCGGATCGTG CGCGATCTGG CCGCCGAACT CGGCAAGCAG
ATCGAGCTGG AGATGCACGG TGCCGACACC GAGCTCGACC GCCAGGTGCT CGACCTGATC
AAGGATCCGC TCACCCATAT GGTGCGCAAC TCCGCCGACC ACGGGCTGGA GAAGCCCGAG
GACCGGGCGC GCGCCGGCAA GCCCGAGCAG GGCACCATCC GCCTGTCCGC CTATCACGAG
GGCGGCCACA TCGTGATCTG CATCGCCGAC AACGGCCGCG GGCTGGACAC CGAACGGATC
AAGGCCAAGG CCTTGGCCAA CGGGCTGGTC ACCGAGGCCG AACTCGAGAA GATGACCGAG
GCGCAGATCC ACAAGTTCAT CTTCGCGCCG GGCTTCTCGA CCGCCGCCGC CGTCACCTCG
GTGTCCGGCC GCGGCGTCGG CATGGACGTG GTGCGCACCA ATATCGACCA GATCGGCGGC
ACGATTGAAG TGAAGTCGGT CGCGGGCGAA GGCTCGGCCA TCACCATCAA GATCCCGCTC
ACCCTGGCGA TCGTCTCGGC GCTGATTGTC GAAGCCGGCG GCGACCGGTT CGCGATCCCG
CAGCTCGCGG TGGTCGAGCT GGTGCGGGCA CGGGCCAACT CCGAGCACCG CATCGAGCGG
ATCAAGGATA CGCCGGTCCT CAGACTGCGC GACAAGCTGC TGCCGCTGAT CCACCTGAAG
AAGCTGCTCG GCATCGACGA GGGCGCCAAC AGCGAGCCGG AGAACGGCTT CATCGTGGTG
ACCCAGGTCG GCAGCCAGAC CTTCGGCATC GTGGTCGACG GCGTGTTCCA CACCGAAGAA
ATCGTCGTCA AGCCGATGTC GACCAAGCTG CGTCACATCG GAATGTTCTC GGGCAACACC
ATCCTGGGCG ACGGCGCGGT GATCATGATC GTCGATCCGA ACGGGATCGC GCAGGCGCTC
GGCACCGCGG TGTCGGCGCA GCACGATATC TCCGACCAGG CGGCGGCGAG CCGCAACGCC
TCGGCCGAAC AGCTCACCTC GCTGCTGGTG TTCCGCGCCG GCTCGAGCCA GCCGAAGGCG
GTGCCGCTGT CGCTGGTGAC GCGCCTGGAA GAGATCGCCT CCGACAAGAT CGAGATGTCG
AACGGCCGCT ACATGGTGCA GTACCGCGAC CAGCTGATGC CGCTCGTGCT GATGGAAGGC
GTCGAGGTCG CCACCAGCGG CGTGCAGCCG ATCCTGGTGT TCGCCGACGA GGACCGGTCG
ATGGGCCTTG TGGTCGACGA GATCGTCGAC ATCGTCGAGG AGCATCTGCA CATCCAGGTC
GGCTCCAGCC GCGAGGGCAT TCTCGGCTCT GCGGTGATCA AGGGCCAGGC CACCGAGGTG
ATCGACGTCG CGCACTTCCT GCCGATGGCG TTCTCCGACT GGCTGGCGCG CAAGGAGATG
AAGCAGTCGC TGACCACCCG CTCGGTGCTG CTGGTCGATG ACTCGGCGTT CTTCCGCAAC
ATGCTGGGTC CGGTGCTGAA GGCGGCGGGC TACAAGGTGC GGGTCGCGAC CTCGGCGGTC
GAGGGCCTGT CGGTGCTGCG CTCGGGTGCG CAGTTCGACG TGATCCTGAC CGACATCGAG
ATGCCGGAGA TGAACGGCTT CGAGTTCGCC GAGGCGATCC GCTCCGACAC GAAGATGTCG
AACCTGCCGG TGATCGCGCT GAGTTCGCTG GTGTCGCCGG CGGCGATCGA GCGCGGCCGC
CAGGCCGGTC TGACCGACTA CATCGCCAAG TTCGATCGGC CCGGCCTGAT CGCTGCGCTG
AAGGAGCAGA CCACGATGCA TGCGACGCCC GAAGTGCTGG AGCAGGCGGC ATGA
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| Protein sequence | MDDLLREFLT ETFESLDTVD NQLVRFEQEP NNAKILDNIF RLVHTIKGTC GFLGLPRLEA
LAHAAETLMG KFRDGMPVTG EAVTLILTTI DRIKDILTQL EATQAEPEGE DGDLIGELER
LSMRSPEEIA AELGGAAPVE VAEVEAPAEA VVAETADANS TEGTLVAQTL ERPLRPGEVS
LDELERAFRE TEIEMASPPL QPAVSEAPAA VAEAAPPEPK PAKPAKPAAK PAAKKSGGEG
EGAAEGGAAG GVANQSIRVN VDTLEHLMTM VSELVLTRNQ LLEISRRHED NEFKVPLQRL
STVTAELQDG VMKTRMQPIG NAWQKLPRIV RDLAAELGKQ IELEMHGADT ELDRQVLDLI
KDPLTHMVRN SADHGLEKPE DRARAGKPEQ GTIRLSAYHE GGHIVICIAD NGRGLDTERI
KAKALANGLV TEAELEKMTE AQIHKFIFAP GFSTAAAVTS VSGRGVGMDV VRTNIDQIGG
TIEVKSVAGE GSAITIKIPL TLAIVSALIV EAGGDRFAIP QLAVVELVRA RANSEHRIER
IKDTPVLRLR DKLLPLIHLK KLLGIDEGAN SEPENGFIVV TQVGSQTFGI VVDGVFHTEE
IVVKPMSTKL RHIGMFSGNT ILGDGAVIMI VDPNGIAQAL GTAVSAQHDI SDQAAASRNA
SAEQLTSLLV FRAGSSQPKA VPLSLVTRLE EIASDKIEMS NGRYMVQYRD QLMPLVLMEG
VEVATSGVQP ILVFADEDRS MGLVVDEIVD IVEEHLHIQV GSSREGILGS AVIKGQATEV
IDVAHFLPMA FSDWLARKEM KQSLTTRSVL LVDDSAFFRN MLGPVLKAAG YKVRVATSAV
EGLSVLRSGA QFDVILTDIE MPEMNGFEFA EAIRSDTKMS NLPVIALSSL VSPAAIERGR
QAGLTDYIAK FDRPGLIAAL KEQTTMHATP EVLEQAA
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