Gene Rpal_1855 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1855 
Symbol 
ID6409514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp1991831 
End bp1992421 
Gene Length591 bp 
Protein Length196 aa 
Translation table11 
GC content61% 
IMG OID642711743 
ProductHemerythrin HHE cation binding domain protein 
Protein accessionYP_001990856 
Protein GI192290251 
COG category[S] Function unknown 
COG ID[COG3945] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.013511 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCACGAA TCATTGAATT GCTGAACGAC GAGCACCGCA ATATCGCGCG CCTGCTCGAC 
GTGCTCGAAC AGGAGCTCAG CGTCTTCGAT CGCCGCGAGC GACCCGACTA CGAAATCTTC 
CAGGCGATCA TTCAGTACTT CAAGGAGTAC CCGGAAGCCT GTCACCATCC GAAGGAAGAC 
GTCGTCTATC GCATCCTGAA GGAGCGCAAT CCCGCGGTCG CCGGAACGGT CGGTGACATC 
GAGAAAGAGC ACGAGCTGGA AGTCGATCGC CTCGCGAACT TCGCCAAGGT GGTGGACGAT 
GTGCTCGCCG ATCAGGAACT GCCGCGTCAG ACCTTCCACG CCGCTGCGCG CGACTTCATC 
GAGCACCAGC GCCGCCACAT GCTGAAGGAA GAACAGCTGC TGTTCCCGGC CGCGCTCGAA 
ACGCTGACCC CGGAAGACTG GGCGAAGATC GACGCGCGGA TCGACGATCG CAAGGATCCT 
ATGTTCGACG GCGAGACCGC GAGCAAGTTC CAGAACCTGT ATGCGACCAT CCTGCGCTGG 
GAGCAGGAAA CCGCAGCCGA CCGCAGCAAG ACGTCGGCGG TGCGCGCCTG A
 
Protein sequence
MSRIIELLND EHRNIARLLD VLEQELSVFD RRERPDYEIF QAIIQYFKEY PEACHHPKED 
VVYRILKERN PAVAGTVGDI EKEHELEVDR LANFAKVVDD VLADQELPRQ TFHAAARDFI 
EHQRRHMLKE EQLLFPAALE TLTPEDWAKI DARIDDRKDP MFDGETASKF QNLYATILRW 
EQETAADRSK TSAVRA