| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1620 |
|---|
| Symbol | |
|---|
| ID | 6409277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1733902 |
|---|
| End bp | 1735287 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642711509 |
|---|
| Product | Fe-only nitrogenase, beta subunit |
|---|
| Protein accession | YP_001990624 |
|---|
| Protein GI | 192290019 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
|---|
| TIGRFAM ID | [TIGR02931] Fe-only nitrogenase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.855819 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTGTC AATTCAAGCC GAAGGATCGG ATCGGCACCA TCAATCCGAT CTTCACCTGC
CAGCCGGCCG GCGCCCAATA CGCCTCGATC GGTATCAAGG ACTGCATCGG CATCGTCCAC
GGCGGCCAGG GCTGCGTGAT GTTCGTCCGC CTGCTGATCT CGCAGCACCT CAAAGAGAGC
TTCGAGATCG CCTCCTCGTC GGTGCACGAG GACGGCGCAG TGTTCGGCGC ACTCGACCGC
GTCGAGGAAG CGGTCGACGT GCTGCTGATG CGCTACCCGC ACGTCAAGGT GGTGCCGATC
ATCACCACCT GCTCGACCGA AGTAATCGGC GACGACGTCG ACGGCGTCGT CACCAAGCTG
CAGGAAGAGC TGCTCGACGT GAAATATCCG GACCGCGAGG TCCATCTGAT CCCGATCCAC
TGCCCGAGCT TCGTCGGCAG TATGGTGACG GGCTACGACG TCGCCGTGCG CGACTTCGTC
AAGCATTTCT CCAAGAAGGA CAAACCGAGC CTGAAGATCA ATCTGATCAC CGGCTGGGTC
AATCCGGGCG ACGTCAAGGA GCTCAAGCAT CTGCTCGCCG AGATGCAGGT CGAAGCCAAC
GTGCTGTTCG AGATCGAGAG CTTCGATAGC CCGCTGATGC CGGACAAGAG CGCGGTGTCG
CACGGCTCGA CCACGATTGC GGACCTGACC GCAACCGCCG ATGCGCAAGG CACCATCGCA
CTCAACCGCT ACGAAGGTGG CCTCGCCGCC ACCTGGCTGC AGACCCGCTG GGACGTGCCG
GCAGTGATCG GCTCAACCCC GATCGGGATC CGCAACACCG ACACCTTCCT GCGCAACGTC
AAGGACATGA CAGGCAAGCC GATCCCGGAA TCGCTGGTCA AGGAACGCGG CATCGCGCTC
GACGCCATCA CCGACCTCGC CCACATGTTC CTGGCCGACA AGAAGGTGGC GATCTACGGC
AATCCGGATC TGGTGCTCGG CCTCGCCGAG TACTGCCTCG ACCTGGAAAT GAAACCGGTG
CTGCTGCTGC TCGGCGACGA GAACGCCGGC TACGCCAACG ACCCTCGGAT CGCGGCGCTG
AAGGCCAATG TCGACTACCC GATGGAGATC ATCACCAACG CCGACCTGTT CGAGCTCGAA
GAGCGCATCA AGAACGGCCT CGAGCTCGAT CTGATCCTCG GCCACTCCAA GGGACGGTTC
GTCGCGATCG ACTACAACAT CCCGATGCTA CGGGTCGGCT TTCCGACCTA CGACCGCGCC
GGCCTGTATC GCTACCCCGT GGTCGGCTAC GCCGGCGCGA CCTGGCTCGC CGAACAGATG
GCCAACACGC TGTTCAACGA CATGGAGGTC AAGAAGAACC GCGAATGGAT CCTGAACGTG
TGGTGA
|
|---|
| Protein sequence | MNCQFKPKDR IGTINPIFTC QPAGAQYASI GIKDCIGIVH GGQGCVMFVR LLISQHLKES
FEIASSSVHE DGAVFGALDR VEEAVDVLLM RYPHVKVVPI ITTCSTEVIG DDVDGVVTKL
QEELLDVKYP DREVHLIPIH CPSFVGSMVT GYDVAVRDFV KHFSKKDKPS LKINLITGWV
NPGDVKELKH LLAEMQVEAN VLFEIESFDS PLMPDKSAVS HGSTTIADLT ATADAQGTIA
LNRYEGGLAA TWLQTRWDVP AVIGSTPIGI RNTDTFLRNV KDMTGKPIPE SLVKERGIAL
DAITDLAHMF LADKKVAIYG NPDLVLGLAE YCLDLEMKPV LLLLGDENAG YANDPRIAAL
KANVDYPMEI ITNADLFELE ERIKNGLELD LILGHSKGRF VAIDYNIPML RVGFPTYDRA
GLYRYPVVGY AGATWLAEQM ANTLFNDMEV KKNREWILNV W
|
|---|
| |