Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1563 |
Symbol | |
ID | 6409220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1658127 |
End bp | 1659938 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642711456 |
Product | type I secretion system ATPase |
Protein accession | YP_001990571 |
Protein GI | 192289966 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGTCC GACGTCGTTC CGAGTTGAAT AACATGACCG CAGTATCGTC AGCCTTGCCA TCAACAGCGT CGAGGGACCT CCCTTCCTCC GCGATCGCCT CCTGCACGAG CGCCTTTCTG ATGGTGGGGC TGTTTTCTGC GGTACTCAAT CTGCTGATGC TTACCGGCTC GATCTACATG TTGCAGGTGT ATGATCGCGT CATTCCTTCG CACAGCGTTC CAACCCTGAT CGCGCTATCG ATTGCCGTCG CGGCAGCATA TGCATTACAG GGACTGTTCG ACCTTCTGCG CCAGCGCATT CTGACCCGGA TCGGAACAGC ACTCCACGCG GCTCTATGGG AACCGGTCGT CTGCAGTATC CTGCGTGGAC CGCTACGCGC TGGCGGCCCC GATCGCGGGC TGCAATTGTC GCAAGATCTG GATTCGGTGC GGTCGTTCCT GTCTGGGCTC GGTCCGACGA CATTGTTCGA CCTGCCGTGG ATGCCGCTTT ATCTCACGGG CTGCTTTCTG CTGCACCCCT ATCTCGGTTG GACGCTCGTC GCAGGCGCCG TGCTGCTGTT CAGCATCGCG CTGCTCACTG AAGTGCTGAC GCGCGCTCCC ACTCAAGACT CGTCACGCGC CGGTGCGATC CGCGGCATCC AGTTGGAAGC CGGCCGGCGC AATGCCGAAA TCGTCGCGGC GCTCGGAATG GAGCGACGAC TGGTCGCTCG GATCGGTGTC GCCAACAATG ATCTGGTCGC CGCGCAGCAG CGCAATGCCG ACATCGCCGG ATCGCTCGGG GCATTGTCGA AGACGCTGCG ATTCATGCTG CAATCGGCCC TGCTCGGCCT TGGCGCATAC TTGGTGATCG AAGGTCTTGC CAGCGGCGGT GTGATGATCG CCGCGTCGAT CATGGGCAGC CGGGCGCTCG CGCCGGTGGA ATTGGCGATT TCGATCTGGC GTCCATTCCT CGGCGCGCGA CAGGCATGGC AACGGCTGCG CGCGGCGCTG GCCAGCGGCG ATGCGTCGGC TCCGGACGTC GCTCCCGAAC GTGCTGTCAA ACGGCTGACG GTCGATCAGG TGGTGATCGC CGCGCCCGGT GGCACCACCG CAATCGTGCA GAGCGCCTCA TTCGCCCTCG AGGCCGGCCA GGCCGTCGGC GTTATCGGGC CTTCCGCCGC AGGAAAATCG ACGCTGGCGC GGGCGCTGGT CGGAATATGG CCGGTCGCAC GCGGCGAGAT TCGTCTTGAC GGCGCCACCC TCGATCAGTG GACGGCAGAA AGCCGCGGCA GCATGATCGG CTATCTGCCG CAAGACGTCG AACTGTTCGA CGGCACGGTC GCGGAGAATA TCGCGCGGTT CGATGCTGAG CTCGATGAGG CCGCGGTGAT CGCCGCAGCG AAAGCCGCCG GCGCCTACGA CATGATCCTG AAACTCCCTA AGGGATTCCA GATGCGGATG GGCGAAGCCG GCGCCACGCT GTCCGGCGGT CAGAGGCAGA GAATCGCGCT GGCGCGCGCG CTGTACAAGG ATCCGTTCAT GGTCGTGCTC GACGAGCCGA ATTCGAGCCT GGACGCCGAA GGCGACGCTG CGCTGACCGA CGCCATCCGG CGCGTTCGCG CGCGGGGCGG CATCGCTATT ATCATCGCGC ATCGGCCGGC GGCCCTCGCC GCGGTCGATC TCGTACTGAC CTTGGCGGCC GGTCAGATCC AGGCTTTCGG CCCGAAGGAT GAAGTGCTGC GCAAGTCACT CGCGGCTCAT CCTGCGGCAA GCGGTGCGGC GCTTCAGGCC GTGCCGGACC CGCGTTCGGT ACCGGCCGCA GCCGTCAGTT GA
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Protein sequence | MTVRRRSELN NMTAVSSALP STASRDLPSS AIASCTSAFL MVGLFSAVLN LLMLTGSIYM LQVYDRVIPS HSVPTLIALS IAVAAAYALQ GLFDLLRQRI LTRIGTALHA ALWEPVVCSI LRGPLRAGGP DRGLQLSQDL DSVRSFLSGL GPTTLFDLPW MPLYLTGCFL LHPYLGWTLV AGAVLLFSIA LLTEVLTRAP TQDSSRAGAI RGIQLEAGRR NAEIVAALGM ERRLVARIGV ANNDLVAAQQ RNADIAGSLG ALSKTLRFML QSALLGLGAY LVIEGLASGG VMIAASIMGS RALAPVELAI SIWRPFLGAR QAWQRLRAAL ASGDASAPDV APERAVKRLT VDQVVIAAPG GTTAIVQSAS FALEAGQAVG VIGPSAAGKS TLARALVGIW PVARGEIRLD GATLDQWTAE SRGSMIGYLP QDVELFDGTV AENIARFDAE LDEAAVIAAA KAAGAYDMIL KLPKGFQMRM GEAGATLSGG QRQRIALARA LYKDPFMVVL DEPNSSLDAE GDAALTDAIR RVRARGGIAI IIAHRPAALA AVDLVLTLAA GQIQAFGPKD EVLRKSLAAH PAASGAALQA VPDPRSVPAA AVS
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