| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1401 |
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| Symbol | |
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| ID | 6409058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1476020 |
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| End bp | 1477423 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711300 |
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| Product | Carotenoid oxygenase |
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| Protein accession | YP_001990416 |
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| Protein GI | 192289811 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCAGG TGACCGGAAT TCCGGATGCG TGCGACAATC TCGCGCCGAT CCCAATGGAA
TGCGACGCGC CGTTCCTCAG CATCAAGGGC GAGCTGCCGC GGGAATTGAA CGGCACGTTG
TATCGCAACG GCGCCAACCC GCAATTCGTC TCGCCGAACG CGCACTGGTT CTTTGGCGAC
GGCATGCTGC ACGCGTTTCA TCTGGAGAAC GGCCGCGCGT CGTATCGTAA CCGCTGGGTG
CGCACGCCGA AATGGCTCGC GGAGCACGAG GCGGGCCGCC CGCTCTACGG CGAGTTCAAC
CTCAAGCTGC CCGATGCACC GCGCTCGGTG CCGGACGACG GCAACGTCGC CAACACCAAC
ATCGTGTTCC ACGCCGGCCG GCTCCTGGCG CTGGAAGAGG CGCATCTGCC GATGCAGATC
GAACGCGACA CGCTCGAGAC CCGCGGTTAC TGCGACTACG GCGGCGCGCT GAAGGGGCCA
TTCACCGCTC ACCCAAAGAT CGACCCGGTG ACCGGCGAGA TGCTGTTCTT CGGCTACAAC
GCCAGCGGCC CGCTGACGCG TACGATGTCG TTCGGGGCGA TCGACGCCTC GGGCAACGTC
ACCCGGCTGG AACATTTCAA GGCGCCGTTT GCGGCGATGG TGCACGACTT CATCGTCACC
GAGCATCATG TGCTGTTCCC GATCCTGCCG CTCACCGGCA GTATCTGGCG CGCGATGCGC
GGCCGGCCGC CCTACGCCTG GGATCCGCGC AAGGGCTCGT ATGTCGGCGT GATGAAGCGC
TCCGGCTCGA CCCGCGACAT CCGCTGGTTC CGCGGCGAGG CCTGCTTCGT GTTCCACGTC
ATGAACGCGT GGGAGGACGG CACCCGGATC GTCGCCGACG TGATGCAGTC GGAGGAAGCG
CCGCTGTTCA CCCATCCCGA TGGTCGCCGC ACCGATCCGG AGAAGGGCCG TGCGCGACTG
TGCCGCTGGA GCTTCGACCT CGCCGGCAAC ACCAACGCCT TCAAGCGCAG CTATCTGGAC
GAGATCAGCG GCGAATTTCC ACGGATCGAC GAGCGCCGTG CCGGCCTGCG CAGCGGCCAC
GGCTGGTACG CGTGCGCCAG CCCGGAAACA CCGATGCTCG GCATGCTCAC TGGACTCGTG
CATGTCGACG GCAACGGCCA TCGCCGCACT CGCTATCTGC TGCCGACCGG CGATACCATC
GGCGAGCCGG TGTTCGTGCC GCGTGCGGCC GACGCAAACG AAGCCGAAGG CTGGCTGCTC
GCGGTGGTGT GGCGCGGCTG CGAGAATCGC AGCGACCTTG CGGTGTTCAA TGCGACCGAC
ATTGCGGCAG GCCCGATCGC CCTGGTGCAT CTCGGCCACC GCATTCCCGA CGGCTTCCAC
GGCAATTGGG TGCCGGCAGG ATAA
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| Protein sequence | MLQVTGIPDA CDNLAPIPME CDAPFLSIKG ELPRELNGTL YRNGANPQFV SPNAHWFFGD
GMLHAFHLEN GRASYRNRWV RTPKWLAEHE AGRPLYGEFN LKLPDAPRSV PDDGNVANTN
IVFHAGRLLA LEEAHLPMQI ERDTLETRGY CDYGGALKGP FTAHPKIDPV TGEMLFFGYN
ASGPLTRTMS FGAIDASGNV TRLEHFKAPF AAMVHDFIVT EHHVLFPILP LTGSIWRAMR
GRPPYAWDPR KGSYVGVMKR SGSTRDIRWF RGEACFVFHV MNAWEDGTRI VADVMQSEEA
PLFTHPDGRR TDPEKGRARL CRWSFDLAGN TNAFKRSYLD EISGEFPRID ERRAGLRSGH
GWYACASPET PMLGMLTGLV HVDGNGHRRT RYLLPTGDTI GEPVFVPRAA DANEAEGWLL
AVVWRGCENR SDLAVFNATD IAAGPIALVH LGHRIPDGFH GNWVPAG
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