| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1312 |
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| Symbol | |
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| ID | 6408969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1378448 |
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| End bp | 1380778 |
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| Gene Length | 2331 bp |
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| Protein Length | 776 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642711211 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001990327 |
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| Protein GI | 192289722 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCTTG CCAGCCAGAA ACGGAACTCC GAGCAAACGT CGCCTGCGAT TCGCGCGGGC
TTGGTCGACT CGTTGTTCAT GAATCCGGCG CCGATGATTG TCGGAGCGTT CGGGCCTGCG
ATTGCCGGCG CGGTCATCGG GTTGGTCACT GGAAGCATCC TGAACTGGCT GTGCGTCCCG
TTGTTCGTTC TCATCGGCTT CGCGCGGGCC GTGCAGATGC GTCGCTATCA GCAGCGCAAC
GCTCCGCTGA CGGTGGAGGA GGCCGACGTC TGGGAGCGTC GCTATCGCTT GGGAGCGATC
GCTCACGGTA TCTCGCTCGG AGCCTGGTCG CTGGTGGTCT TGCTCGGTAC CGACGACTCG
GCCGCGCATA TGCTGTGCGT CGCGACTGTG GTGGCATATA CTTCGGCGGG TGTTGGACGG
ACCTTTGGCC GCCCCCAGAT CTTCCATCTG CAGGTGCTGC TGAGCTGTGG TCCACTGATC
TTCGCGATGG TGAGGGTCGG CGGGGTCTAT TATCTCACGC TGGCGTTGCT CAGTGCGGTG
TTCTTTATCT CGATCCGTCA TCTGACATCG AGCCTGCAGC GAATCTATCT CAACGCCTGG
ATCGGCCGGG AGCGCGAGGC TGCACTGGCC AACCAGTTCG ACACCGCGCT GAACAACATG
CCGCACGGGT TGTGCATGTT CCGCGCCGAC GGCCGCCTCG CTGTGATGAA CCATCGCTTT
GCCGAGATGA TGCGGCTCCG GGACGAACTG GTCAAAGGCT CGCCCACCGC GACCGAAATC
GTATCCGCGT GCGTAGCGAT CGGCGCGATT TCAGCAGCGA GTGGCCGCCT GATCCTGTCG
GAGATAGAGA GCGCGCTCGC GGGCGAGATC GTTACGGTCG GCGATGAGAC GATTCCCCGG
TCCTTGTGCT GGACATTCCA GCCGATGGCG GACGGCGGCG CCGTGGTGCT GATCGAAGAT
ATCACCGAGC GTCGCAACGC CGAAGCGCGG ATCGTTCATC TTGCGCGTTA CGACGAGCTC
ACGGCGCTGC CGAACCGGGT CAGCTTCCGG GACGAAATCG AGCGCATTCT TGAGGCCGAG
CACGGCAGGG GCAAGACCCG GCTTTCGGCG CTGTTGTTCA TCGACCTCGA CCAGTTCAAG
CAGATCAACG ACACGCTCGG CCATCCATGC GGCGATCGGC TGCTGTGCTC CGTTGCCGAA
CGGCTGCGTG ACATGCTGCG GCCGGACGAT TATGTGGCGC GATTCGGTGG CGATGAATTC
GTCGTCTTCC AGCAGAACAT CGCCTCGAAC GAAGATGCTG CGGCGCTGGC TCGCCGAATC
GTCGATCGGC TCAGCGACCG CTATCTGATC GATCATCACG TTGTTGAGAT CGGTGCCTCG
ATCGGCATTG CGATGACGTC GCCGGGCACT AAGGCCGACA TCCTTCTCAA GAATGCCGAT
ATGGCGCTGT ATCGCGCCAA GGCCGACGGC CGCGGCAATT ACTGCTTCTT CCGCGAGGAA
ATGGCGCAAA CCGTCGAGGC CCGCCGCATC CTCGAGCTCG ATCTGCGCAA GGCGCTCGCC
AACGAAGAAT TTGAGCTGTA CTACCAGCCG CTGGTGAATC TCAAATCCGG CAAGATCACC
ACCTGCGAAG CGCTGCTGCG CTGGAATCAC CCGGTGCGCG GGACGGTATC ACCGGTCGAT
ATTATTCCGG TCGCCGAGGA CATGGGGCTG ATCGTCGACC TCGGTCGCTG GATTCTGCGC
AAAGCATGCA TGGAATGCAT GCTTTGGCCG GAGCCGGTAA GTGTCGCGAT CAACTTCTCT
CCGCAGCAGT TCCATCAGCG TGACGTGCTG ACAGAAGTGC GGTACGCGCT TGAAGTTTCC
GGCCTGCCTG CCAGCCGGCT GGAGATCGAA ATCACCGAAT CCTCGTTGCT GCGGAATACG
CAGTGGACGC ACGACGCGTT GCAGCAGCTT CACGCCGAAG GCGTTCGAAT CTCGCTCGAC
GATTTCGGCA CGGGCTATTC GTCACTCAGC TATCTGCACA GCTTCCCTTT GCAGAAGGTG
AAGATCGACC GCTCGTTCCT CGAGGGGATC GACAGCGACC GGCCGCTGAC TCTGTTGCGC
GGCGTCGCTC GTCTCAGCAG CGATCTTGGC ATGTCGGTGG TCGTGGAAGG CATCGAAACC
AACGAGCAGC TCGAATTGAT CAGCGCCGAC GGCACCGTCA CCGAGGCGCA GGGCTATCTG
TTCAGCCGTC CGGTCCCCGC CCAGCGCATT CGGCAATTGC TGAACGCGTC GCAGGGGGTG
CGCCAAAAAG ACGGCAAAGT GCTTTCTTTG CCGACGCGAT CGATCGCCTA A
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| Protein sequence | MQLASQKRNS EQTSPAIRAG LVDSLFMNPA PMIVGAFGPA IAGAVIGLVT GSILNWLCVP
LFVLIGFARA VQMRRYQQRN APLTVEEADV WERRYRLGAI AHGISLGAWS LVVLLGTDDS
AAHMLCVATV VAYTSAGVGR TFGRPQIFHL QVLLSCGPLI FAMVRVGGVY YLTLALLSAV
FFISIRHLTS SLQRIYLNAW IGREREAALA NQFDTALNNM PHGLCMFRAD GRLAVMNHRF
AEMMRLRDEL VKGSPTATEI VSACVAIGAI SAASGRLILS EIESALAGEI VTVGDETIPR
SLCWTFQPMA DGGAVVLIED ITERRNAEAR IVHLARYDEL TALPNRVSFR DEIERILEAE
HGRGKTRLSA LLFIDLDQFK QINDTLGHPC GDRLLCSVAE RLRDMLRPDD YVARFGGDEF
VVFQQNIASN EDAAALARRI VDRLSDRYLI DHHVVEIGAS IGIAMTSPGT KADILLKNAD
MALYRAKADG RGNYCFFREE MAQTVEARRI LELDLRKALA NEEFELYYQP LVNLKSGKIT
TCEALLRWNH PVRGTVSPVD IIPVAEDMGL IVDLGRWILR KACMECMLWP EPVSVAINFS
PQQFHQRDVL TEVRYALEVS GLPASRLEIE ITESSLLRNT QWTHDALQQL HAEGVRISLD
DFGTGYSSLS YLHSFPLQKV KIDRSFLEGI DSDRPLTLLR GVARLSSDLG MSVVVEGIET
NEQLELISAD GTVTEAQGYL FSRPVPAQRI RQLLNASQGV RQKDGKVLSL PTRSIA
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