Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1177 |
Symbol | |
ID | 6408833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1248612 |
End bp | 1249784 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642711075 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_001990192 |
Protein GI | 192289587 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGGAC TTCGATCGGT CTGCGCGGCC GCGGCCTTGT CGTTCGTCGC GGCAGGCGCC CACGCCGATA CCATCAAGGT CGGCGTGATC GGCACCATGT CGGGGCCGTA CGCGCTGTTC GGCCAGAACT TCAAGATGGG CATCGACGCT TGGGTCGCCG AGCACGGCAA CAAGGTCGGC GGCCACACCG TCGAGTTCGT CTATCGTGAT GAGGTCTCGC CCAATCCGGC GCAGTCCAAG GCGCTGGCGC AGGAGCTGAT CGTCAAGGAG AAGGTTCAGT ACATCGCCGG CCTGTACTTC ACGCCGAACG CGATGGCGGT GGCGCCGCTG CTTCAGGAAG CCAAGGTGCC GATGGTGGTG CTGAACGCGG CGACCTCCTC GATCACCGAG AAGAGCCCCT ACATCGTCCG CACCTCGTTC ACGATGTTCC AGAACACCGT GCCGGCCGCG AAGGTCGCCA AGCAGAAGGG CGCCAAGAAG GTTGCGATCG CTGTCAGCGA TTACGGTCCG GGTATCGACG CCGAAACCGC GTTCAAGAAG ACCTTCGAGG CCGAAGGCGG CAGCGTCGTC GAGGCGGTCC GGATGCCGCT GGCCACCACC GACTTCGGTC CGATCATGCA GCGGATCAAG GATTCGGGCG CCGACATGAT CTTCACCTTC CTGCCGGCCG GTCCGCCGAC GCTCGGCTTC GTCAAAGCCT ATATCGATAA CGGCCTGAAG GCGGCCGGCG TCAAGCTGAT GTCGACCGGC GACGTGGTCA CCGAGCCCGA TCTGCCGAAC ATCGGCGATT CCGGCATCGG CATTCTGTCG ACCTACCACT ATGCGGTGTC GCACGACTCG CCCGAGAACA AGGCGTTCCT CGCTCTGCTG CAGAAGGGCG GCGCCAAGCT GGGCGATGTC ACCATGACTT CGGTCGCGGC TTACGACGGT GCCCGCCTGA TCTACAAGAT GATCGAGGCG ACCGGCGGCA AGCAGGATCC CGAGAAGGCG ATTGCCGCCG TCAAGGACAT GAAGTGGACC AGTCCGCGCG GACCGGTGTC GATCGATCCG ACCACCCGCC ACATCACCCA GAGCGTGTAT CTGCGCGAGG TGGAGAAACA GGACGGTAAG CTGATCAACA AGGAGATCGA GACCTTCAAG GATCAGCCGG ACTGGGGACT GGTTAAGCAG TAA
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Protein sequence | MKGLRSVCAA AALSFVAAGA HADTIKVGVI GTMSGPYALF GQNFKMGIDA WVAEHGNKVG GHTVEFVYRD EVSPNPAQSK ALAQELIVKE KVQYIAGLYF TPNAMAVAPL LQEAKVPMVV LNAATSSITE KSPYIVRTSF TMFQNTVPAA KVAKQKGAKK VAIAVSDYGP GIDAETAFKK TFEAEGGSVV EAVRMPLATT DFGPIMQRIK DSGADMIFTF LPAGPPTLGF VKAYIDNGLK AAGVKLMSTG DVVTEPDLPN IGDSGIGILS TYHYAVSHDS PENKAFLALL QKGGAKLGDV TMTSVAAYDG ARLIYKMIEA TGGKQDPEKA IAAVKDMKWT SPRGPVSIDP TTRHITQSVY LREVEKQDGK LINKEIETFK DQPDWGLVKQ
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