| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1173 |
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| Symbol | |
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| ID | 6408829 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1242187 |
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| End bp | 1244574 |
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| Gene Length | 2388 bp |
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| Protein Length | 795 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642711071 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001990188 |
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| Protein GI | 192289583 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.524225 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCAACA AGCTGTCGGC GCCCGAACAG GCGCTCATCG ATCGCGAAAG GGAACTCGCT
GAAGTTCAGC GCATCGCCAA AGTCGGCGGT GTGGTGGTGG ATCTGACCGC CGGGTTCCGC
AATCACCGTT CGCCGGAGTA TCTGGCGATC CACGGCCTGC CGCCTGAAGC CGTCAACGAG
ACGCATGAAG ACTGGGTCCG CCGGTTGCAT CCCGATGATC GTGAACGCGC CGAGCGGCAG
TTCCTCGATC TGATTAAGGG AACGTCCGAC CGCTACTCGG CGGAGTATCG CATCATCCGC
CCGAATGACG GCGAGGTCCG CTGGATCGCG GCGGAAGGAC GGATCGACCG CGATGAATCG
GGACGCGCGG TGCGGATGGT CGGCGCGCAT ATCGACATTA CCGATCGCGC CATCGCCCGC
GAGATGCTGC GCGAGAGCGA GCAGCGCTTC AAAGCGATCG CCGACAGCGC GCCGGTGCCG
ATCTGGGTGA CCCGGCTCGA CCGCACCCGC AGCTTCGCCA ACCGCGCCTA TTGCGACTTC
ATCGGACTGC CCTATGAGGA CGCGCTGGTG TTCGACTGGC GCAGCATCAT CCATCCCGAC
GATGTCGCCG AGGTGGTACG TAACAGCGTC GCCGGGGAAG CCTCGCTGCA GCCGTTTGTG
CTCGAAGGGC GCTATCGCCG CGCCGACGGG CAATGGCGAT GGATCAGGTC GGAGTCGCAG
CCGCGTTGGG ATCCGGCCGG CCGCCACATC GGCTTCATCG GCGTCGCGCA CGACATCACC
ACCGCCAAGC AGGCGGAGAT CGATCTGCGC AATGTCAACG AGACGCTTGA GCGGTTGATC
GCGCAGCGCA CCGCGCAACT GCATTCCAGC GAGTCCCAGC TCCGCGCGAT CCTGGAGACC
ACCAACCAGT ATCAGGGCCT TCTCGATCTC AAGGGCCGGC TGCTCTACGT CAATGGCACC
GCGCTCGCAG GCATCGCGGC CGAGCCGGCG CAGGTGCTGG GCGCGCTGTT CTGGAAGACG
CCGTGGTTCG AGGCGGCGCC CGAGGCGGCA AGCGCGATCG AGCGCGCGTT CCGCACGGCG
CGCGTCGGCG AGATCGCCAA GCTCGATCTG GAACTGCAGC TTCCCGCCGG GACGCGCCAT
ATCGATTTCT CATTGCGGCC GGTGGCGGAT ACGCAGGGCG GGGTGATGGC GGTGCTGGCC
GAGGGGATCG ATTCCACCGA GCGCCGCCGC AACGAAGAGG CGCTGCGACA GGCGCAGAAG
ATGGAGGCGG TCGGGCAACT CACCGGCGGC GTCGCGCACG ACTTCAACAA CCTTCTCACG
ATCATCCGTT CCGCGGTGGA CTTCCTGCGC CGTCGCGATC TGCCGGAGGA GCGCCGCCGC
CGCTACGTCG ATGCGATCTC GGACACGGCG GATCGTGCCT CGAAGCTCAC CGGGCAGCTG
CTTGCTTTCG CGCGGCGGCA ACCATTGTCG CCGGTGGTGT TCGATGTCGC GGCCCAGATC
CAGAGCATCG CCAATCTGAT CCGCCCGCTG GTCGGCAGCC GGGTCGAGAT CGATGTCGAC
ACCGGGTCGG GACCGAACTA CGCGATCGCC GACGTCGGCC AGTTCGAAAC CGCTTTGGTC
AATCTCGCTG TCAACGGCCG CGACGCGATG AACGGCGAGG GGCGGTTGTC GATCGCGCTC
CGCCGCGTCG ATGAGATTCC GCCGGTCCGG TCGCAGCCGG CGCGGCCTGG CGAGTTCGTG
GCGATCTCGG TCACCGACAG CGGCAGCGGC ATCGCGCCGA CCCATCTCGA TGTCATCTTC
GAACCGTTCT TTACGACCAA GGAGGTCGGC CGCGGCACCG GCCTTGGTCT CAGTCAGGCG
TTCGGTTTCG CCAAACAGTC CGGCGGCGAG ATCAGCGTGC ACAGTACGCT GGACGAGGGC
GCGACGTTCA CCATCTATCT GCCGCAGGCC CAGGCGCCGG AGCAGACCGC GGCGGCGACG
CTGTCGCGCA CCGATCCGGC GGGCGGGCTC GGTCATCGCA TCCTGGTGGT GGAAGACAAT
GTCGAGGTCG GGAAGTTCTC GACCGAACTG CTGCAGGATC TCGGCTACAC CATCAAATGG
GTCAAATCCG CCGACGAGGC ACTGGCGGCG CTGGACGAAG ACGAGTTCGC GTTCGATCTG
GTGTTCTCGG ATGTGATCAT GCCCGGCAAG AACGGCGTCG AACTCGCCAC CATCATCCGC
GAGCGCTATC CCGGCCTGCC GGTGGTGCTG ACCAGCGGCT ACAGCAGCGT GCTTGCCGAG
AATGCGCATC AGGGCTTCGA ACTGGTGCAG AAGCCTTATT CGGTCGAGGC GATTTCGCGC
GTGTTGCGGC GGGCGATTTC CGAACGCAGG ACGCGGCCGA CGGGATGA
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| Protein sequence | MTNKLSAPEQ ALIDRERELA EVQRIAKVGG VVVDLTAGFR NHRSPEYLAI HGLPPEAVNE
THEDWVRRLH PDDRERAERQ FLDLIKGTSD RYSAEYRIIR PNDGEVRWIA AEGRIDRDES
GRAVRMVGAH IDITDRAIAR EMLRESEQRF KAIADSAPVP IWVTRLDRTR SFANRAYCDF
IGLPYEDALV FDWRSIIHPD DVAEVVRNSV AGEASLQPFV LEGRYRRADG QWRWIRSESQ
PRWDPAGRHI GFIGVAHDIT TAKQAEIDLR NVNETLERLI AQRTAQLHSS ESQLRAILET
TNQYQGLLDL KGRLLYVNGT ALAGIAAEPA QVLGALFWKT PWFEAAPEAA SAIERAFRTA
RVGEIAKLDL ELQLPAGTRH IDFSLRPVAD TQGGVMAVLA EGIDSTERRR NEEALRQAQK
MEAVGQLTGG VAHDFNNLLT IIRSAVDFLR RRDLPEERRR RYVDAISDTA DRASKLTGQL
LAFARRQPLS PVVFDVAAQI QSIANLIRPL VGSRVEIDVD TGSGPNYAIA DVGQFETALV
NLAVNGRDAM NGEGRLSIAL RRVDEIPPVR SQPARPGEFV AISVTDSGSG IAPTHLDVIF
EPFFTTKEVG RGTGLGLSQA FGFAKQSGGE ISVHSTLDEG ATFTIYLPQA QAPEQTAAAT
LSRTDPAGGL GHRILVVEDN VEVGKFSTEL LQDLGYTIKW VKSADEALAA LDEDEFAFDL
VFSDVIMPGK NGVELATIIR ERYPGLPVVL TSGYSSVLAE NAHQGFELVQ KPYSVEAISR
VLRRAISERR TRPTG
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