Gene Rpal_1155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1155 
Symbol 
ID6408811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp1225769 
End bp1227562 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content64% 
IMG OID642711053 
Productnickel-dependent hydrogenase large subunit 
Protein accessionYP_001990170 
Protein GI192289565 
COG category[C] Energy production and conversion 
COG ID[COG0374] Ni,Fe-hydrogenase I large subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.295857 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAACG TCACGACTCC CAACGGCTTC AAGCTCGACA ATGCCGGCCG CCGCGTCGTC 
GTCGATCCGG TGACCCGGAT CGAGGGACAC CTGCGCGTCG AGGTCAATGT CGACAGCAAC
AACGTCATCC GCAATGCGGT GTCGACCGGC ACGATGTGGC GCGGCATCGA GGTGATCCTC
AAGGGCCGCG ATCCGCGCGA CGCCTGGGCG TTCACCCAGC GGATCTGCGG CGTCTGCACC
GGCACTCACG CACTCACGTC GGTGCGCGCG GTCGAGAACG CGCTGAAGAT CAACGTGCCG
GAGAACGCCA ACACCATCCG CAACATCATG CAGCTCGCGC TGTATGTGCA TGACCATTTG
GTCCACTTCT ATCATCTGCA CGCGCTCGAC TGGGTCGACG TGGTGTCGGC CCTGAAGGCC
GACCCAAAAG CCACCTCAGC GCTGGCGCAG TCGATCTCGC CGTGGCCGAT GTCGTCGCCG
GGCTACTTCA AGGATCTGCA GATCCGCCTG ACCAAGTTCG TCGAGAGCGG CCAGCTCGGC
CCGTTCAAGA ACGGCTATTG GGGCCATCCC GCCTACAAGC TGCCGCCCGA AGCCAATCTG
ATGGCGGTGG CGCACTATCT CGAGGCGCTC GATTTCCAGA AGGAAATCGT CAAGATCCAC
ACCGTCTACG GCGGCAAGAA CCCGCATCCG AACTGGCTGG TCGGTGGCGT GCCGTGCTCG
ATCAATGTCG ATGGTACCGG CGCGGTCGGC GCGATCAACA TCGAGCGGCT CAATCTGGTG
TCGTCGATCA TCGACCAGAC CGTCGCCTTC GTCGAGCAGG TCTATGTGCC CGATCTGGTG
GCGATCGCCG GATTCTATAA GGACTGGCTG TATGGCGGCG GGTTGTCGTC GAAGTCGGTG
ATGTCCTACG GCGACCTGCC GGAATACGCC AACGACTATT CCGACAAGAG CCTGATGCTG
CCGCGCGGCG TGATCATCAA CGGCAATCTC AACGAGGTGC TGCCGGTCGA TCTGAGCGCG
CCGGACCAGA TCCAGGAATT CGTCACTCAC TCCTGGTACA AATGCGCCGA TGAGGGCAAG
GGCCTGCATC CGTATGACGG CGTCACCGAG CCGAACTTCG TGCTCGGCCC CAACGCCAAG
GGCACCCGCA CCAACATCGA GGCGCTGGAC GAATCTGCCA AATACTCGTT CCTCAAGGCG
CCGCGCTGGA AGGGGCACGC GGTCGAGGTC GGGCCGCTGG CGCGCTACAT CATCGGCTAC
GCCCAGGGCA AGCCGGAGTT CAAGGAGCCG ACCGAAAAGC TGCTGAAGAC GCTCGACGTG
CCGGTCACCG CGCTGTTCTC GACGCTCGGC CGCACTGCAG CGCGCGGGCT CGAATGCCAG
TGGGCGGCGC GCAAGCTGCG CGCGGCGCAG GACAAGCTGA TGGCCAGCAT CAAGGCCGGC
GATCTATCCA CTGCCAATAC CGACAAATGG CACCCGTCGA GCTGGCCGAA AGACGTCAAG
GGCGTCGGCT TCACCGAGGC GCCGCGGGGC GCACTGGCGC ACTGGGTCAA GATCAAGGAC
ACCCGGATCG ACAATTATCA GTGCGTGGTG CCGACCACCT GGAACGGCAG CCCGCGCGAT
CCGCAAGGCA ACATCGGTGC ATTCGAAGCG GCGCTGCTCG ACACGCCGAT GGCCGACCCC
AACCAGCCGC TGGAGATCAT CCGCACGCTG CATTCGTTCG ATCCGTGCCT CGCCTGCTCG
ACCCACGTGA TGAGCGAGGA CGGTCAGGAA ATGGCACAGG TCAAGGTCAG CTGA
 
Protein sequence
MTNVTTPNGF KLDNAGRRVV VDPVTRIEGH LRVEVNVDSN NVIRNAVSTG TMWRGIEVIL 
KGRDPRDAWA FTQRICGVCT GTHALTSVRA VENALKINVP ENANTIRNIM QLALYVHDHL
VHFYHLHALD WVDVVSALKA DPKATSALAQ SISPWPMSSP GYFKDLQIRL TKFVESGQLG
PFKNGYWGHP AYKLPPEANL MAVAHYLEAL DFQKEIVKIH TVYGGKNPHP NWLVGGVPCS
INVDGTGAVG AINIERLNLV SSIIDQTVAF VEQVYVPDLV AIAGFYKDWL YGGGLSSKSV
MSYGDLPEYA NDYSDKSLML PRGVIINGNL NEVLPVDLSA PDQIQEFVTH SWYKCADEGK
GLHPYDGVTE PNFVLGPNAK GTRTNIEALD ESAKYSFLKA PRWKGHAVEV GPLARYIIGY
AQGKPEFKEP TEKLLKTLDV PVTALFSTLG RTAARGLECQ WAARKLRAAQ DKLMASIKAG
DLSTANTDKW HPSSWPKDVK GVGFTEAPRG ALAHWVKIKD TRIDNYQCVV PTTWNGSPRD
PQGNIGAFEA ALLDTPMADP NQPLEIIRTL HSFDPCLACS THVMSEDGQE MAQVKVS