Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1045 |
Symbol | |
ID | 6408701 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 1112164 |
End bp | 1115313 |
Gene Length | 3150 bp |
Protein Length | 1049 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642710958 |
Product | heavy metal efflux pump, CzcA family |
Protein accession | YP_001990075 |
Protein GI | 192289470 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGGCC GGCTGATCGA GTTCAGCGCG CGGAACGCGC TTCTCATGCT TCTCCTTATC GTGGCCATCA TCGGCGGAGG CGTTTGGGCG GTCTACAACA CGCCCTTGGA TGCACTTCCG GACCTCTCGG ATGTGCAGGT CATCGTCGCC ACTGATTGGG AAGATCGCAG TCCCAACATC ATCGAAGACC AAATCACCTA TCCCATCGTG ACGCAGTTGC TCTCCGCCTC AAAGGTCAAG GCGGTGCGAG CCACCAGTTT TTACGGCCAG TCTCTGGTCT ATGTCATCTT CGAAGACGGT ACTGACCTGT ACTGGGCGCG CAGCCGGGTC TTGGAGTATC TTAGCGGCAT GGCCGGCAAG CTGCCGGCGG GCGTTTCTCC GCAGTTGGGG CCGGACGCAA CCGGCGTGGG TTGGGGGCTC GAATACGTTC TGATTGACAA GACCGGAAAA CACTCGCTGT CCGAGCTTCG CAGTCTGCAG CAATGGCAAG TGCAGTATCA GATCCGCGCC GTTCCAGGCG TTGCGGAAGT CGCCAGCGTC GGCGGCTTCG TGAAACAATA TCAGGTCACC GTCGACCCGG ACAAGCTGCT GGCCTACAAA ATTCCGATCA ACAAGGTGGT GGAGCAGGTT CGCCGAGGCA ATCAGGAAGT CGGCGGCAGG GTATTGGAGT TCACCGGCAC CGAGTACATG GTGCGAGGTC GGGGCTATTT CCAATCGCCG TCCGACATTG AAAAGGTGGC AGTCGGAGCA CAGTCCGATG GGACGCCTGT TCTGGTCCGC GACGTCGGCT TCGTCCAGAT CGGTCCGGAC ATCCGCCGTG GCGTGGTCGA CTACAACGGG TTGGGCGACG CTGCTGGCGG CATCGTGGTC GTCCGGTTTG GCGAAAGTGT CTACGACGTG TTGGCTTCCG TGAAGCAGAC GATCAAGGAC ACGGTGCAAC CAGGCTTGCC GGAGGGCGTC GAACTCAATC TCACATATGA CCGGTCCACC CTTATCAATC ATTCGGTCCA GACGCTGAGA GAGAAGCTTA TCGAAGAAGG AGTGATCGTA AGCCTGGTTT GTCTGGTATT CCTGTTCCAT TTTCGCAGCG CCTTGGTCGC AATCATCACG CTGCCATTGG CAGTCCTGCT GGCGATGATC GCGATGCGAT GGATCGGGCT GACCAGCAAC ATCATGAGTC TGGGTGGCAT CGCGATTGCG GTCGGGGCGA TGGTCGATGC GGCCATCGTG ATGATCGAGA ACGCTCACAA ACATATCGAA AGAGAGGAGG CCAAGCCCGC TGAGCAGCGC CGGCCGCGGC TGGAACTCGT GATCGTGGCC TGTCGAGAGG TGGGGCCGTC GCTGTTCTTC TCGCTGCTCA TTATCACCGT CAGCTTTCTG CCGGTGTTTG CCCTTCAGGA CCAGGAAGGT CGGTTGTTCA GGCCGCTCGC CTACACCAAA TCCTTTAGCA TGTTGTTTGC GGCGGTGCTG TCCGTCACCG TCACCCCGTT CTTGATGGTA TGGCTCGTCC GCGGCAAGAT TCCTGCCGAG GAGAACAATC CAATCAACCG CTTCCTGATT TGGATTTATC AGCCTGTTGC CATGCTGGCG TTGCGGCTGC GCTACGTCAT GGTCGGCGTC GCCGTTTTCG CCACCGTCGC CATCATCCCC ATCTACAGAA GCCTGGGTAG CGAGTTCATG CCGCCGTTAT GGGAAGAATC GGTGCTGTTC ATGCCCGCGA CCCTGCCGGC GGCGTCGATA CAGACGATGA GGCAGGCGAT CCAGGAGCAG GACGCCATTC TGCTCGGCTT CCCGGAAGTT GCGAGCGTGT TCGCCAAAGC GGGACGCGCC GAAAGCGCGA CCGACCCGGC TCCGCTGGAA ATGGTCGAGA CGGTCATCAA CCTCAAGCCG CCGGAGCAGT GGCGGAACGG CATCACCCCG GACAAGCTGA TCGCAGAGAT GAACGCGGCG CTGAACGCGA AGATGAAAGG CTTCTCAAAC AGCTGGACAA TGCCGATCAA GGCTCGCATC GACATGCTTT CCACCGGAAT CCGCACGCCG CTCGGCGTCA AGGTGTTCGG ACCGGACCTT GCGGAAATCG GAAGGATTCT GTCGAACGTG GAGGCCGCGG TCGGCACCAT TCCGGGCACA AGAAGCGTGT TTGCCGAACG TGTGGCGCAG GGCCATTACC TGGACTTCGA TATCGATCGC GATGCGATCG CCCGTTACGG GCTCTCAGTC ATGGACGTGC AGGAAGTTAT CCAGGCGGCG GTGGGCGGCG CCAATCTGAC GCAGACCATC GAGGGCCGCG AGCGCTATCC GGTCAACGTC CGCTACGGAC GTGACCTCCG AGATGACGTC GGCAAATTGC AGCGGATACT GGTCGCCACC CCTCTGGGAG CGCAAGTGCC CTTGCAGGAA CTGGCAAAGC TGCGATTCGT CGATGGCCCC GGTCTGATCA AGAGCGAAGC TGCGCAGCTT GTGGGGTATG CCTACATCGA CATCGCAGAC CGAGACACCG GCAGCTACAT GAACGACGCC CGCAAGATTG TCGGCGAAAT GGTGAAGCTG CCTCCGGGTT ACCGATTGGA ATGGAGCGGA TCGTTCGAGG GAATGCAACG GGCGAGCCAG CGACTTCTGT ACGTCATCCC GATCACACTC GCCGTCATCT TCTTGTTGCT CTACCTGAAC GCGCGATCGA TTGCCAAAGC GCTGATCGTG ATGATTGCGG TGCCGTTTTC CCTGGTGGGC GCATTCTTCC TGCTTTGGCT GTTGGGCTAT CACCTTAGCG TTGCCGTATG GGTTGGGATC ATCGCGCTGG CCGGGGTCGA CGCCGAGACC GGGATGGTGA TGCTGCTGTA TCTGGACGTC GTCTACGAGC GCTGGAAGGA GGAAGGTCGG ATGCGAAGCA TCCACGACCT CGAAAGTGCC GTGATGGAGG GAGCCGTGCA ACGCGTCCGG CCAAAGATGA TGACCGTGCT GGCGATATTA ATGGGACTCT TGCCTATCAT GTGGTCCAGC GGAGCGGGCT CCGATGTCAT GAAGCGAATC GCCGCTCCGA TGGTCGGCGG CGTCGTTACC AGTTTTCTCT TAACGCTGCT GATCTATCCG GCCATATACG TCATTTGGAA ATGGTGGAGC GAGGTGCGAT ACCGTCAAGC GGCCAATTGA
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Protein sequence | MIGRLIEFSA RNALLMLLLI VAIIGGGVWA VYNTPLDALP DLSDVQVIVA TDWEDRSPNI IEDQITYPIV TQLLSASKVK AVRATSFYGQ SLVYVIFEDG TDLYWARSRV LEYLSGMAGK LPAGVSPQLG PDATGVGWGL EYVLIDKTGK HSLSELRSLQ QWQVQYQIRA VPGVAEVASV GGFVKQYQVT VDPDKLLAYK IPINKVVEQV RRGNQEVGGR VLEFTGTEYM VRGRGYFQSP SDIEKVAVGA QSDGTPVLVR DVGFVQIGPD IRRGVVDYNG LGDAAGGIVV VRFGESVYDV LASVKQTIKD TVQPGLPEGV ELNLTYDRST LINHSVQTLR EKLIEEGVIV SLVCLVFLFH FRSALVAIIT LPLAVLLAMI AMRWIGLTSN IMSLGGIAIA VGAMVDAAIV MIENAHKHIE REEAKPAEQR RPRLELVIVA CREVGPSLFF SLLIITVSFL PVFALQDQEG RLFRPLAYTK SFSMLFAAVL SVTVTPFLMV WLVRGKIPAE ENNPINRFLI WIYQPVAMLA LRLRYVMVGV AVFATVAIIP IYRSLGSEFM PPLWEESVLF MPATLPAASI QTMRQAIQEQ DAILLGFPEV ASVFAKAGRA ESATDPAPLE MVETVINLKP PEQWRNGITP DKLIAEMNAA LNAKMKGFSN SWTMPIKARI DMLSTGIRTP LGVKVFGPDL AEIGRILSNV EAAVGTIPGT RSVFAERVAQ GHYLDFDIDR DAIARYGLSV MDVQEVIQAA VGGANLTQTI EGRERYPVNV RYGRDLRDDV GKLQRILVAT PLGAQVPLQE LAKLRFVDGP GLIKSEAAQL VGYAYIDIAD RDTGSYMNDA RKIVGEMVKL PPGYRLEWSG SFEGMQRASQ RLLYVIPITL AVIFLLLYLN ARSIAKALIV MIAVPFSLVG AFFLLWLLGY HLSVAVWVGI IALAGVDAET GMVMLLYLDV VYERWKEEGR MRSIHDLESA VMEGAVQRVR PKMMTVLAIL MGLLPIMWSS GAGSDVMKRI AAPMVGGVVT SFLLTLLIYP AIYVIWKWWS EVRYRQAAN
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