| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1001 |
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| Symbol | |
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| ID | 6408656 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1063767 |
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| End bp | 1065305 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642710915 |
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| Product | UbiD family decarboxylase |
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| Protein accession | YP_001990033 |
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| Protein GI | 192289428 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAGCC GCGTCAAACC GCCCTTCCCT GATCTGCGTG CATTTAGTGG CTATCTCGAA
TCACGCGGAC AGTTGCACCG CATCCGCAAG CCGGTGTCGG TGGTCCATGA CCTCACAGAA
ATCCATCGCC GCGTGCTGCA TGCCGGTGGC CCGGCACTCC TGATCGAAAA CCCGATCAAG
GCCGACGGCA CGCCGTCCGA GATGCCGATC CTGGTCAATC TGTTCGGCAC CGTCGAACGG
GTGGCCTGGG GCCTCGGCAT TTTGCCGGAG AATCTATCGC GGCTCGGCGA GGCGCTCGCC
GAAATGCGAG AGCCGGCACC GCCGCAGAGC CTGACCGACG CTTTGAGCAA GCTGCCGATG
GCCAAGGCCG CGCTGGCGAT GCGGCCGAAG CTGGCGAAAT CGGCGCCGGT GCAGGAAGTG
GTGCTGACCG GCGACGCGGT CGATCTCGGT CGGCTGCCGG TGCAGATCCC CTGGCCCGGA
GAACCGGCAC CGCTGATCAC CTGGGGCCTC GTCTTCACCA AGCCGCCGCC CGGCGCGCAC
GGCACCGACA ATGTCGGCGT CTACCGGATG CAGGTGCTGG GCAAGGATCG CCTGATCATG
CGCTGGCTGG CGCATCGCGG CGGAGCCAAG CACCACCACC AGTGGAAGGC CGACAAGCGC
GAGATGCCGG TCGCGATCGT GATCGGCGCC GATCCGTCGA TGATTCTCTC GGCGGTGCTG
CCGCTGCCGG AGACGGTGTC GGAGATCAAA TTCGCCGGCC TGCTCGGCGG CGAGCGTCCG
AGCCTGACGC CGTGCCAGAC CATTCCGATC AGCGTGCCAG CCGATGCCGA GATCGTGCTG
GAAGGCTTCG TGTCACCGAC CGAGACCGCG CCGGAGGGGC CGTATGGCGA CCACACCGGC
TATTACAACG CGGTCGAGGA ATTCCCGGTG ATGCGGATCA CCGCGATCAC CATGCGCCGG
CATCCGATTT ATCTGTCGAC CTATACGGGA CGGCCGCCGG ATGAGCCATC GCGACTTGGC
GAGGCGTTCA ACGACGTGTT TCTTCCGGTC GCGCGGCGGC AATTCCCCGA GATCGTCGAT
CTGTGGCTGC CGCCGGAAGC GTGTTCCTAT CGGATCGCCG TCGCCTCGAT CAAGAAACGC
TATCCCGGCC AGGCGCGCCG GCTGATGATG GGGCTGTGGT CGATGCTGCC GCAGTTCAGC
TACACCAAGC TCCTGATCAT CGTCGACGAC GACGTCGATG TCCGCGACTG GGCCGACGTG
ATGTGGGCGG TGTCGACACG CTGCGACACC TCGCGCGACA TGGTGTCGAT CAGCGACACC
CCGATCGATT ATCTCGACTT CGCCTCGCCG AAATCCGGAC TCGGCGGTAA GCTCGGCATC
GACGCCACCA ACAAGATCGG CACCGAGACC GAGCGCGAGT GGGGCAAGGT GCTGGAGATG
GACAAGGACG TGATTGCACG GGTCGATGCG ATGTGGACCA GCCTCGGACT GTCGCCGGAA
CATCAACCGG CGGCCGGGCA ACGCCGGCTG ATCCGATGA
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| Protein sequence | MLSRVKPPFP DLRAFSGYLE SRGQLHRIRK PVSVVHDLTE IHRRVLHAGG PALLIENPIK
ADGTPSEMPI LVNLFGTVER VAWGLGILPE NLSRLGEALA EMREPAPPQS LTDALSKLPM
AKAALAMRPK LAKSAPVQEV VLTGDAVDLG RLPVQIPWPG EPAPLITWGL VFTKPPPGAH
GTDNVGVYRM QVLGKDRLIM RWLAHRGGAK HHHQWKADKR EMPVAIVIGA DPSMILSAVL
PLPETVSEIK FAGLLGGERP SLTPCQTIPI SVPADAEIVL EGFVSPTETA PEGPYGDHTG
YYNAVEEFPV MRITAITMRR HPIYLSTYTG RPPDEPSRLG EAFNDVFLPV ARRQFPEIVD
LWLPPEACSY RIAVASIKKR YPGQARRLMM GLWSMLPQFS YTKLLIIVDD DVDVRDWADV
MWAVSTRCDT SRDMVSISDT PIDYLDFASP KSGLGGKLGI DATNKIGTET EREWGKVLEM
DKDVIARVDA MWTSLGLSPE HQPAAGQRRL IR
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