Gene Rpal_0918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0918 
Symbol 
ID6408572 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp973065 
End bp973538 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content66% 
IMG OID642710832 
Productprotein of unknown function UPF0047 
Protein accessionYP_001989951 
Protein GI192289346 
COG category[S] Function unknown 
COG ID[COG0432] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00149] secondary thiamine-phosphate synthase enzyme 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.676321 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTCAT CACGTACTCT CAGCCGCGCG CCGCTGGCGC GCGCGACCGT CACCAGCGTC 
GCTTCGTCGG TTCTGACGGT GCAGACGGGT GGGACCGGCT TCACCGACAT CACGCGCGAG 
ATCTCGGCGT TCGTCGCCGA GGCGCAGGCG AAAGACGGCG GCGTCACCGT GTTCGTGCGC 
CACACCTCCG CGTCGCTGAC GATCCAGGAA AATGCCGATC CGACCGTGCT GACAGATCTA 
TCGACGGTGC TGAACCGGCT CGCGCCGGAG AATGCCGGTT GGCGTCACGA CACCGAAGGG 
CCGGATGACA TGCCGGCGCA CGTCAAGACG ATGCTGACGT CGGTCTCGCT GCAGATTCCA 
GTGCTGCAGG GCAGGCTCGC GCTCGGCACT TGGCAAGGTG TGTATCTGAT CGAGCACCGC 
CGCCGGCCCC ATCGCCGCGA GGTGGTGCTG CAGTTCATCG GCACGACGGG GTAA
 
Protein sequence
MSSSRTLSRA PLARATVTSV ASSVLTVQTG GTGFTDITRE ISAFVAEAQA KDGGVTVFVR 
HTSASLTIQE NADPTVLTDL STVLNRLAPE NAGWRHDTEG PDDMPAHVKT MLTSVSLQIP 
VLQGRLALGT WQGVYLIEHR RRPHRREVVL QFIGTTG