| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0871 |
|---|
| Symbol | |
|---|
| ID | 6408525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 923945 |
|---|
| End bp | 924991 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642710785 |
|---|
| Product | putative metallo-hydrolase/oxidoreductase |
|---|
| Protein accession | YP_001989904 |
|---|
| Protein GI | 192289299 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0130781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGACCGC ACGACATCCT GATGCCGACC GCCGCCGGCC TGTGTTGCAG GCTCGGCGGC
TTCCACATCG ATCCGGTGCG GCCGGTCGAC CGCGCGGTGA TTACTCACGG CCATTCCGAT
CACGCCCGCG CCGGGCACGG CACCGTGCTG GCGACCCAGC CTACGCTCGA CATGATGCGG
CTACGCTACG GCGACAACTT CGCAGGCTCG ACCCAGGCGG TCGCCTATGG CGAGACCATC
CGGCTCGGTG ACACGACCGT CACGTTCCAT CCTGCCGGCC ATGTGCTCGG CTCAGCCCAG
GTCGCGGTCG AAGCCGGCGG CATCCGCATC GTCGCCTCCG GCGACTACAA GGACGCGCCC
GACCCGACCT GCACGCCATT CGAGATCGTG TCGTGCGATG TGTTCATCAC CGAGGCGACC
TTCGGGCTGC CGGTGTTTCG CCATCCCGAT GCGGCAGGTG AAGTCAGAAA GCTGCTCGAC
TCCGTCGCCC TGTTTCCGGA ACGCGCGCAC CTGGTCGGCG CCTACTCGCT CGGCAAGGCG
CAGCGGGTGA TCGCGCTGAT CCGGCAGGCC GGCTACGACG CACCAATCTA TCTGCACGGC
GCGATGGAGA AGATCACGCA TTACTATCAG TCGTCCGGCA TCGCGCTGGG CGAACTACGC
CCGGTGAAGG GCGTCAAGAA GGCCGAGCTG GCCGGCACCA TTACGGTGGC GCCGCCGTCA
GCGACCTCCG ATCTCTGGAC ACGCCGCTTC CCCGATCCGC TCACCGCGTT CGCCTCGGGG
TGGATGCGGG TGCGCGCCCG TGCCCGCCAG CGCGGCGTCG AACTGCCGTT GGTGATCTCC
GACCACGCCG ATTGGGACGG CCTCACCGCC ACCATCGCCG CCACCGGCGC CGGCGAAGTC
TGGGTCACCC ACGGCCAGGA GGACGCGCTG GTGCATTGGT GCCAGACCAA GGGCCTCGCT
GCGCGGCCGC TCGACCTGGT CGGCTATGGC GACGAAGATG AAGACGTCGG CATGCCGACC
GGCGAGAGCG AGGCCGCAGA GGCATGA
|
|---|
| Protein sequence | MRPHDILMPT AAGLCCRLGG FHIDPVRPVD RAVITHGHSD HARAGHGTVL ATQPTLDMMR
LRYGDNFAGS TQAVAYGETI RLGDTTVTFH PAGHVLGSAQ VAVEAGGIRI VASGDYKDAP
DPTCTPFEIV SCDVFITEAT FGLPVFRHPD AAGEVRKLLD SVALFPERAH LVGAYSLGKA
QRVIALIRQA GYDAPIYLHG AMEKITHYYQ SSGIALGELR PVKGVKKAEL AGTITVAPPS
ATSDLWTRRF PDPLTAFASG WMRVRARARQ RGVELPLVIS DHADWDGLTA TIAATGAGEV
WVTHGQEDAL VHWCQTKGLA ARPLDLVGYG DEDEDVGMPT GESEAAEA
|
|---|
| |