| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0870 |
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| Symbol | |
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| ID | 6408524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 922080 |
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| End bp | 923948 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710784 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001989903 |
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| Protein GI | 192289298 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.140434 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGCT TCGCCGAACT GCTCGACCGC CTCGGCTATG AGCCCGGCCG TAACAACAAG
CTGCGGCTGA TCACCAATTA CTTTCGCGAG GTCGAAGATC CCGACCGCGG CTGGGCGCTT
GCAGCGTTGA CCGGCGCGCT GTCGTTCCGC CATGCCAAGC CCGGCCTGAT CCGCGCCCTG
ATCGCCGAAC GCACCGACCC GGTGCTGTTC GGCCTGTCCT ACGACTACGT CGGCGATTTG
TCGGAGACGG TGGCGCTGAT GTGGCCCTCT CCCCGCAACG CGGCCGTCTC CTCTCCCCCA
GGCTGGGCCC CCTCCCCTCC CCCCTGCGGG GAGGGGTCGG GGGTGGGGGT CCACACCGGG
ACGTCATCCT CGGGGCGCCC TCACCCCACC CCTCTCCCGC AAGCGGGAGA GGGAGCGCGC
CGCGCATCGG GAGAGGACGG CGATTCCGAA CTAAGCTCCG CAACGAGCAC CGGCCACAAC
AACCCGCCGC CCCCGACACT CAGCGAGATC GTCACTACGC TGCACAGTCT CGGCAAGGCG
GAGCTGCCGG CGCAGTTGGC GCGCTGGCTC GATGAGCTCG ACGAGACCGG GCGCTGGGCG
CTGCTCAAGC TGGTGACCGG GGGCTTGCGG ATCGGCGTGT CGGCGCGGCT CGCGAAGACC
GCCACTGCGG CGCTCGGCGA CAAGGATCCC CACGACGTCG AACTGGTGTG GCCCGGACTC
CAGCCGCCAT ATCGCGAGCT GTTCGCCTGG CTCGAAGACC GCGGGCCGCA GCCGGTCAAT
CGCGATCCGG CGCCGTTCCG CCCGGTGATG CTGGCGCATG CGATCGACGA CACCGACTTC
GCCGCGATGA ATCCGGCCGA CTACATCGCC GAATGGAAAT GGGACGGCAT CCGGGTCCAG
GCGGTCAGCG GCCAGAACGA GCACGGGGAC ACGGTCGTGC GGCTGTATTC GCGGAGCGGC
GAAGACATCA CCATGAGCTT CCCCGATCTG TTGCCGTCGC TGCATCTTCC CGGCGCCATC
GATGGCGAGC TCCTGGTGCT GCGTGACAAG CGCGTGCAAT CGTTCAACGT GCTGCAGCAG
CGGCTGAACC GTAAATCAGT CACGCCGAAG TTGACGAAGG ACTATCCGAT CCATCTGCGC
GCCTATGACC TGCTCGGCGA AGGCGACGAG GACCTGCGAA CACTGCCGTT CGCCGAGCGA
CGCGCCCGCC TCGAGACCTT CATCGCGAGG CTCGACGATC CCAAGGTCGA CCTGTCGCCG
ATCGTCACCT TCGACGATTG GGAAGCCTTG CGCGCGGCAC GCCGCGATCC GGCGAGTACC
GGCGCCGGGC TCGATGCCGA CGCGGTCGAA GGCGTGATGC TGAAGCGGCG CGACGCGCTG
TATCTGCCTG GCCGCCCCAA GGGCCAGTGG TGGAAGTGGA AGCACGACCC GCACATCATC
GATGCCGTGC TGATGTATGC GCAGCGCGGC CACGGCAAAC GCTCGTCGTA TTATTCCGAC
TACACCTTCG GGGTCTGGAC CGAAGGCGAC GGCGGCGATC AGCTCGTGCC GGTCGGCAAG
GCGTATTTCG GCTTCACCGA CGAAGAGCTG CTGCAGATCG ACCGCTTCGT CCGCCGCAAC
ACCACCGAGA AATTCGGCCC CGTCCGGCAT GTCGTGCACG AGCCCGACAA GGGCCTAGTG
CTGGAAGTGG CGTTCGAAGG ATTGCAGCGC TCGCCGCGCC ACAAATCCGG CGTAGCGATG
CGGTTTCCCC GCATCAACCG GCTGCGCTGG GACAAGCCGC CGAAGGACGC CGACCGGCTG
GACACGCTGG AGCGGATGCT GAAGGCGGAG ACCGCAAATC CGCCGGCGAC CGCCGCCCGC
GGCCATTGA
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| Protein sequence | MNRFAELLDR LGYEPGRNNK LRLITNYFRE VEDPDRGWAL AALTGALSFR HAKPGLIRAL
IAERTDPVLF GLSYDYVGDL SETVALMWPS PRNAAVSSPP GWAPSPPPCG EGSGVGVHTG
TSSSGRPHPT PLPQAGEGAR RASGEDGDSE LSSATSTGHN NPPPPTLSEI VTTLHSLGKA
ELPAQLARWL DELDETGRWA LLKLVTGGLR IGVSARLAKT ATAALGDKDP HDVELVWPGL
QPPYRELFAW LEDRGPQPVN RDPAPFRPVM LAHAIDDTDF AAMNPADYIA EWKWDGIRVQ
AVSGQNEHGD TVVRLYSRSG EDITMSFPDL LPSLHLPGAI DGELLVLRDK RVQSFNVLQQ
RLNRKSVTPK LTKDYPIHLR AYDLLGEGDE DLRTLPFAER RARLETFIAR LDDPKVDLSP
IVTFDDWEAL RAARRDPAST GAGLDADAVE GVMLKRRDAL YLPGRPKGQW WKWKHDPHII
DAVLMYAQRG HGKRSSYYSD YTFGVWTEGD GGDQLVPVGK AYFGFTDEEL LQIDRFVRRN
TTEKFGPVRH VVHEPDKGLV LEVAFEGLQR SPRHKSGVAM RFPRINRLRW DKPPKDADRL
DTLERMLKAE TANPPATAAR GH
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