| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0706 |
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| Symbol | |
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| ID | 6408359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 741952 |
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| End bp | 742650 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642710621 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001989741 |
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| Protein GI | 192289136 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.438313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGGCG CGCTCGATGT TTTGGCTCCC GCTGAAGTCA TAGTCGCCGC GACTGCCCCG
GCTGATAACG AAGCGTCGGA CATGCCGCCG GTCGAGATCG TGCTCGATAG TCCGCCGGTG
AGTGCCGAGA TGGTGTTCGA CGAGGACGCC GATCTGCTCG ACCGGCTCGC GACCGACGAC
GAAGCGGCCT TCAGGATGCT GGTCGAGCGG CACATCGACC GGGCCTATTC GATCGCGCTC
CGCATCCTCG GCAATTCGGC CGATGCCGAA GACGTGGTGC AGGACACCAT GCTGAAGGTG
TGGACGCATC GCGGGCGCTG GCAGCACGGC CGTGCCAAGT TCTCGACCTG GCTGTATCGC
GTCGTCAGCA ATCGCTGCAT CGACCTGCGC CGTAAGCCGC GTACCGAGAA CGTTGAAGCC
GTTCCCGAGG TGGCTGATAC TCAGCCGGAT GCTGTCCGCG TGATCGAGCG CAACGAGCTT
AGCAATCTGC TCGAAGCGGC GATGCAGCGG CTGCCCGAGC AGCAGCGGAT CGCCGTGATT
CTGTCGTACC ACGAGAACAT GAGCAACGCC GAGATCGCCG AGGTGATGGA CACCACCATC
GCCGCGGTGG AGTCGCTGCT CAAGCGCGGG CGCCAGCAGC TTCGCGCACG GCTCAGTGGC
GATGAGTCCG AGCTGCGGGC GGCGTTTACC GATTTTTGA
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| Protein sequence | MNGALDVLAP AEVIVAATAP ADNEASDMPP VEIVLDSPPV SAEMVFDEDA DLLDRLATDD
EAAFRMLVER HIDRAYSIAL RILGNSADAE DVVQDTMLKV WTHRGRWQHG RAKFSTWLYR
VVSNRCIDLR RKPRTENVEA VPEVADTQPD AVRVIERNEL SNLLEAAMQR LPEQQRIAVI
LSYHENMSNA EIAEVMDTTI AAVESLLKRG RQQLRARLSG DESELRAAFT DF
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