| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0636 |
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| Symbol | |
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| ID | 6408287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 688744 |
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| End bp | 690612 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642710549 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_001989671 |
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| Protein GI | 192289066 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.168 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGACA ATCGCAACAC CATCCTCGCC GTCGTTCTGT CGGGCCTCGT GCTGCTCGGC
TGGCAGTACT TCTTCAACAT CCCGCAGATG GAAAAGCAGC GCGCCGCCCA GCAGGCGCAG
CAGCAGGCCG CCAAGCAGCA GGCTGAAACC CAAACGCCGG GCGCAGCTTC ACCCGCCGCC
GCACCGGCCG CGCCTGGCGC CCCGGGTTCG GCTCCCGCAA GCCCGCAGCA GCAGGCCGCC
GCTCCGACCG TCAGCCGCGA AGCCGCGCTT GCTGCCGGGC CGCGCATCAA GGTCGAAACT
CCGCGCCTGT CCGGCTCGAT CGCGCTAAAG GGCGCCCGGA TCGACGATCT GGCGCTGATG
CAATATCGCG AAACGGTCGA TCCGAAGTCG CCGCCGATCG AGCTGTTCTC GCCGTCGGGC
AGCGCCCGGC CGTATTACGC CGAATTCGGT TGGGTCGGTG CCGCCGGCGC CAGCGTCAAG
CTGCCGGACC ACAACACGCT GTGGGAGCAG GAAGGCACCG GGGCACTGAC ACCGGCCAAT
CCGGTCACGC TGAAATGGGA CAACGGCGAA GGTCTCACCT TCCGCCGCCA GATCACCGTC
GACGACCGCT ATCTGTTCAC CGTCAAGGAC GACGTCACCA ACACCGGTGG CGCCCCGGTA
ACGCTGTATC CGTTCGCGCT GATCTCGCGC CACGGCACCC CGCACGTCGA AGGCTACTAC
ATCCTGCACG AAGGCCTGAT CGGCTATCTC GGCGACCAGG GCTTGCAGGA ATACAGCTAC
AGCAAGATTG ACGAGGCCAA GTCGGTCGGC TTCAAGGCGA CCAACGGCTG GCTCGGCATC
ACCGACAAGT ACTGGGCCTC GGCGCTGCTG CCCGACACCA GCGCCCAACT CCAGGCGCGG
TTCTCGGCCA ACAAGGTCGG CAACGTCACC ACCTATCAGA CCGATTATCT CGAAGACGCC
CGCACCGTTC CGATCGGCGG CACCGTCACC GCGAACGCAC GGCTGTTCGC CGGCGCCAAG
GAAGCGCGGG TGGTCGGCAT CAACTTCCCG TTCGCCGGTC TCGGCGGTTA CGACCGCCAG
CTCGGCCTGA ACCATTTCGA CCTGTTGATC GACTGGGGCT GGTTCTACTT CATCACCAAG
CCGATGTTCC TGGCGCTGGA CTTCTTCTTC CATCTGGTCG GGAATTTCGG CGTCGCCATT
CTGCTGGTGA CGGTGCTGGT CAAGCTCTTG TTCCTGCCGC TCGCCAACAA GTCTTACGCC
TCGATGGCGA AGATGAAGGC GATCCAGCCA CAGCTTGCCG CGCTCAAGGA GCGCCACCCC
GACGACAAGG TGAAGCAGCA GCAGGAAATG ATGGAGATCT ACCGCAAGGA GAAGATCAAT
CCGGTCGCCG GATGTCTTCC GATCCTGCTG CAGATCCCGG TGTTCTTCTC GCTGTACAAG
GTGCTGTTCG TTACCATCGA AATGCGGCAC GCGCCGTTCT TCGGCTGGAT TCACGACCTC
TCGGCACCGG ATCCGACCAA CATCTTCAAC CTGTTCGGCC TGATCCCCTA CGATCCGACC
GCGATCCCGG TGCTCGGCCA CTATCTTGTG CTCGGTGCCT GGCCGCTGGT GATGGGCTTC
ACGATGTGGT TCCAGATGAA GCTGAACCCG CAGCCGCCGG ATCCGACCCA GCAGATGATC
TTCGCCTGGA TGCCGGTGAT CTTCACCTTC ATGCTGGCGC ACTTCCCGGC CGGTCTGGTG
ATCTACTGGG CCTGGAACAA CACTCTTTCG GTGGCGCAGC AGGCCTTCAT CATGCAGCGC
AACGGCGTGA AGGTGGAGCT CTGGGACAAT CTGAGAACCA GCTTCGCCAA GAAGAAAAAG
CCGACCTGA
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| Protein sequence | MSDNRNTILA VVLSGLVLLG WQYFFNIPQM EKQRAAQQAQ QQAAKQQAET QTPGAASPAA
APAAPGAPGS APASPQQQAA APTVSREAAL AAGPRIKVET PRLSGSIALK GARIDDLALM
QYRETVDPKS PPIELFSPSG SARPYYAEFG WVGAAGASVK LPDHNTLWEQ EGTGALTPAN
PVTLKWDNGE GLTFRRQITV DDRYLFTVKD DVTNTGGAPV TLYPFALISR HGTPHVEGYY
ILHEGLIGYL GDQGLQEYSY SKIDEAKSVG FKATNGWLGI TDKYWASALL PDTSAQLQAR
FSANKVGNVT TYQTDYLEDA RTVPIGGTVT ANARLFAGAK EARVVGINFP FAGLGGYDRQ
LGLNHFDLLI DWGWFYFITK PMFLALDFFF HLVGNFGVAI LLVTVLVKLL FLPLANKSYA
SMAKMKAIQP QLAALKERHP DDKVKQQQEM MEIYRKEKIN PVAGCLPILL QIPVFFSLYK
VLFVTIEMRH APFFGWIHDL SAPDPTNIFN LFGLIPYDPT AIPVLGHYLV LGAWPLVMGF
TMWFQMKLNP QPPDPTQQMI FAWMPVIFTF MLAHFPAGLV IYWAWNNTLS VAQQAFIMQR
NGVKVELWDN LRTSFAKKKK PT
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