| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0610 |
|---|
| Symbol | prfA |
|---|
| ID | 6408260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 665014 |
|---|
| End bp | 666099 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710523 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_001989645 |
|---|
| Protein GI | 192289040 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0905177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACAC TGCCCGAAGC CAAGCTCGAC GTCCTCCTCG CGCATCACGC CGCGCTCGAA
GCGCAGTTGA TGGCCCAGGT CGGTGCCGAG GACTACGTCC GCATCACCCG CGAATTGTCG
GAGCTCAATC CGCTGGTCGA GGCGGTGAAG AGCTATCGCC AGGTCCGCGA CGAACTCGGT
GAGATCGACG AACTGCTGGA AGATCCGGCC ACCGAGCCGG AGATGCGGGC GATGGCTGAG
GCCGAGCGCG ACGCGCTCGA CGCCCATCGC GACGAACTGA TCCAGCAGAT CCGTATCGCG
CTGTTGCCGA AGGACGCGAT GGACGAGCGC AACGTGATGC TGGAAATCCG CGCCGGCACC
GGCGGCGACG AGGCCTCGTT GTTCGCCGGC GACCTGTTCC GGATGTACGA GAAGTTCGCC
GCGCTGCAGG GCTGGAGCGT CGAAGTGATT TCGGCCAGCG AAGGCACCGT CGGCGGCTAC
AAGGAAATCA TCGCCGAAGT GAAGGGTCGC GGCGCGTTCG CCAAGCTGAA GTTCGAATCG
GGCGTACACC GTGTCCAGCG CGTGCCCGAT ACTGAAACGC AGGGCCGCAT CCACACCTCG
GCCGCGACCG TCGCGGTGCT GCCCGAGGTC GAGGACGTCG ATGTCGATAT CAAGCAGGAC
GACCTGCGAA TCGAGACGAT GCGGGCGCAG GGCGCCGGCG GCCAGCACGT CAACAAGACC
GAGTCGGCGA TCCGAATTAC CCATCTGCCG ACCGGCATCG TGGTGATGAT GCAGGACAGC
CGCTCGCAGC ATAAGAACCG CGCGTCGGCG ATGAACATCC TGCGATCACG GATCTACGAC
GCCGAACAGC AGCGTCTCGA CGCGGCGCGC TCCGCCGAGC GCAAGGCCAA GGTCGGCTCC
GGCGACCGCT CCGAGCGGAT CCGCACCTAC AACTTCCCGC AAGGCCGCGT CACCGATCAT
CGAATCAATC TGACGCTGTA CAAGCTGCCG CAAGTGATCG CCGGCGAAGC GCTCGGCGAA
CTGATCGACG CGCTCACCAC CGAGCATCAG GCGGCGCAGC TCGCCGAGCA GGGCAACGCG
GCGTGA
|
|---|
| Protein sequence | MSTLPEAKLD VLLAHHAALE AQLMAQVGAE DYVRITRELS ELNPLVEAVK SYRQVRDELG
EIDELLEDPA TEPEMRAMAE AERDALDAHR DELIQQIRIA LLPKDAMDER NVMLEIRAGT
GGDEASLFAG DLFRMYEKFA ALQGWSVEVI SASEGTVGGY KEIIAEVKGR GAFAKLKFES
GVHRVQRVPD TETQGRIHTS AATVAVLPEV EDVDVDIKQD DLRIETMRAQ GAGGQHVNKT
ESAIRITHLP TGIVVMMQDS RSQHKNRASA MNILRSRIYD AEQQRLDAAR SAERKAKVGS
GDRSERIRTY NFPQGRVTDH RINLTLYKLP QVIAGEALGE LIDALTTEHQ AAQLAEQGNA
A
|
|---|
| |