| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0576 |
|---|
| Symbol | |
|---|
| ID | 6408226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 625002 |
|---|
| End bp | 625796 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710489 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001989611 |
|---|
| Protein GI | 192289006 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.490377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCG ATAGCGTTGG CCGGGCGGAT GACCCGGCGG GGTCTTCCTC CGTGTCTGCG
GCGATCGAGG TCTCGCATCT GGTCAAGACC TACAAGACCA CGCGGGCGGT CGACGACATC
TCGTTCCGTG TCCCGCGCGG CAGCATCACC GGACTGCTCG GCGGCAACGG CGCCGGCAAG
ACCACGACGA TCGCGATGAT CATGGGGCTG GTGCTGCCGA CCGCAGGGCG GATCCGCGTA
CTCGGCTGCG CGATGCCCGA GCAGCGCGCC GATGTGCTCG GCCGGATCAA TTTCGAAAGT
CCTTATGTCG ACATGCCGTC GCGGCTGACG GTGCGGCAAA ACCTGACGGT GTTCGGCCAG
CTCTACGCGG TGCCGGACTT GCGCGGCCGG ATTGCCGAAC TCGCCGCCGA TTTCGATCTG
ACCGACTTTC TCGACCGCGC CTCCGGCAAA TTGTCGGCCG GGCAGAAGAC CCGGGTGGCG
CTGGCAAAGG CGCTGATCAA CCAGCCCGAA TTGTTGCTGC TCGACGAGCC GACCGCTTCG
CTCGATCCCG ACACCGCCGA CTGGATCAGG TCGCATCTGG AAAGTTATCG CAAGCGCCGC
GGCGCCAGCA TCCTGCTGGC TTCGCACAAC ATGCTCGAGG TCGAGCGGCT GTGCGATCGC
GTCGTGATCA TGAAGCGCGG CCGGATCGAG GACGACGACA CCCCGTCGGC GATCATGGCG
CGCTATCACC GGTCGACGCT GGAGGAGGTG TTTCTCGACG TCGCCCGCGG CCGGGCACGG
GATGCAGAAT CATGA
|
|---|
| Protein sequence | MAIDSVGRAD DPAGSSSVSA AIEVSHLVKT YKTTRAVDDI SFRVPRGSIT GLLGGNGAGK
TTTIAMIMGL VLPTAGRIRV LGCAMPEQRA DVLGRINFES PYVDMPSRLT VRQNLTVFGQ
LYAVPDLRGR IAELAADFDL TDFLDRASGK LSAGQKTRVA LAKALINQPE LLLLDEPTAS
LDPDTADWIR SHLESYRKRR GASILLASHN MLEVERLCDR VVIMKRGRIE DDDTPSAIMA
RYHRSTLEEV FLDVARGRAR DAES
|
|---|
| |