Gene Rpal_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0560 
Symbol 
ID6408210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp608997 
End bp609914 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content67% 
IMG OID642710473 
Productphosphoribosylaminoimidazole-succinocarboxamide synthase 
Protein accessionYP_001989595 
Protein GI192288990 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0152] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 
TIGRFAM ID[TIGR00081] phosphoribosylaminoimidazole-succinocarboxamide synthase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.208618 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACGA TGCTCTCGAG CGACCTGCCG CTGACCAAGA TCGGCCGCGG CAAGGTGCGC 
GACATCTATG CCGTCGACGA CGACCGGCTG CTGCTCGTCA CCACCGACCG GATCAGCGCC 
TTCGACGTGG TGATGGGCGA GACCATTCCG ATGAAGGGCG CCGTGCTGAC CCAGGTGAGC 
GCATTCTGGT TCGGCCAGCT CGGCGGCGTG GTGCCGCATC ACATGATCAG CGCCGACATC 
GACGAGATCA TCGCCGCGGT CCCGGCACTG CAGGGCCTTC GCGCAGCACT GGCCGGCCGC 
ACCATGCTGT GCCGACGCAC CACCGTATTC CCGATCGAAT GCGTGATCCG TGGCTACATC 
ACCGGCTCGG CATGGAAGGA ATACGCCGCC TCCGGCACGC TGGCGGGCGA GAAGCTGGCC 
GCGGGGCTGA CGGAGAGCGA GCGGCTGGAG CCGCCGATCT TCTCGCCGGC CACCAAGGCC 
GAGACCGGTC ACGACGAGAA CATCACCATC GCACGGATGC GTGAGATCGT CGGCGACGAG 
GCCGCCTACA CGCTCGAAAG CATGACGCGC GCGATCTACA CCCAGGGCGA AGAGGTCGCC 
CGCGAGCAGG GCATCATCAT CGCCGACACC AAGTTCGAGT TCGGCCGCGA CAAGGACGGC 
CGCATCATCC TGATCGACGA GGTGATGACG CCGGATAGTT CGCGGTTCTG GGCGGCCGAT 
ACGTACGCGC CGGGCCGGTC GCAGCCGTCA TTCGACAAGC AGCCGCTGCG CGATTATCTC 
GACGCCGAAC GCCGTGCCGG CCGCTGGAAC GGCGAAGCGC CGCCGCCGAA GCTGCCGGCC 
GAGATCGTCG AGGCGACCTC GAAGCGCTAT CTCGATGCCT ACCGCCGGCT CACCGGCACC 
GATCTGGTGG TGACTTAA
 
Protein sequence
MTTMLSSDLP LTKIGRGKVR DIYAVDDDRL LLVTTDRISA FDVVMGETIP MKGAVLTQVS 
AFWFGQLGGV VPHHMISADI DEIIAAVPAL QGLRAALAGR TMLCRRTTVF PIECVIRGYI 
TGSAWKEYAA SGTLAGEKLA AGLTESERLE PPIFSPATKA ETGHDENITI ARMREIVGDE 
AAYTLESMTR AIYTQGEEVA REQGIIIADT KFEFGRDKDG RIILIDEVMT PDSSRFWAAD 
TYAPGRSQPS FDKQPLRDYL DAERRAGRWN GEAPPPKLPA EIVEATSKRY LDAYRRLTGT 
DLVVT