Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0536 |
Symbol | |
ID | 6408185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 583921 |
End bp | 586398 |
Gene Length | 2478 bp |
Protein Length | 825 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 642710448 |
Product | ATP-dependent helicase HrpB |
Protein accession | YP_001989571 |
Protein GI | 192288966 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACCCGCA CCTTCGACAC CCCGCTGCCG ATCGACGACG CTCTCGACGA GCTCACCGCC GCGCTTGAGG CGAGCAATAC CGCCGTGTTG GTCGCGCCCC CCGGCGCCGG CAAGACCACC CGCGTGCCGC TCGCGTTGCT CGATGCACCG TGGCTGAGAA ACCAAAAGAT CATCGTGCTG GAGCCACGGC GGATCGCCGC CCGCGCCAGC GCCGAGCGGA TGGCGAAGAC GCTGAGCGAG AAGGCTGGCG AGAGGATCGG TTACCGCGTC CGATTCGGCT CCAAGGTGTC ACGCGCCACC CGGATCGAGG TCGTCACCGA GGGTATTTTC ACCCGCCAGA TCCTCGACGA CCCGGAACTC AACGGCGTCG CCGCGGTGCT GTTCGACGAG TTTCACGAAC GCTCACTCGA CGCCGATCTC GGCCTCGCCC TGGCTCGCGA CGCCCAGCAA GGTCTGCGCG AAGATCTGCG AATCCTGGTG ATGTCGGCCA CCATCGACGG CGCCCGCGTC GCCCGGCTGC TCGGCGATGC GCCGGTGGTC GAAAGCCTCG GCCGGGCGTT TCCAGTCGAG ACCCGCTATC TCGGCCGCCG CAGCGACGCG CCGCTAGAGA GGCTGATGGC CGAGGCGATC GCGCAGGCGC TGCGGGCGGA AACCGGATCG GTGCTGGCGT TTCTGCCCGG CGCCGCCGAG ATCCGGCGCA CCGAGACGAT GCTGCGCGAG CGTGTGCAGG ACCCGGGGGT CGAGATCGTG CCGCTGTTCG GCGCGCTCGA CGCCGCCGTG CAGGACCGCG CCATCCAGCC GGCGCCGAAG GGCCAGCGCA AAGTGGTGCT GGCGACCTCG ATCGCCGAGA CCTCGCTGAC GATCGAAGGC GTACGGATCG TGGTCGATTG CGGCTTGTCA CGGGTCCCCC GTTACGAGCC CGACCTCGGC CTCACCCGGC TCGAGACCGT CCGCGCCTCG CGCGCCGCGG TCGATCAGCG CCGCGGCCGC GCCGGCCGTA TCGAGCCCGG CGTGTGCTAC CGACTTTGGG ACGAGCCGCA GACCGCGTCG CTGCCGGCCT ATACGCAACC TGAAATCCTA TCCGCCGATC TGTCATCGCT GCTGCTCGAC CTCGCCCAAT GGGGCGTTGC CGATCCGTCG TCGCTGGCGT TTCTCGATCC GCCGCCCCAG CCGGCGCTGA AGGAAGCCCG TGAGCTGCTC GGCGAGCTCG GCGCACTCGA CCCGGACGGC CGCATCACCG ACGAGGGCCG CAGCCTGCGG GCGATGGCGC TGCCGCCCCG GTTGGCGCGG ATGATCGTCG ATGCCGCCCA CCACGGCTGC GCCGAGGACG CCGCCGAAGT CGCCGCGATT CTCACCGAGC GCGGGCTGGG CGGCGATAGC GCCGACCTCG ACCATCGCCG TGATCAATTC CGCCGCGACC GCTCGCAGCG CGCCAGCAGC GCCCGGCAGA TGGCGCAGCG CTGGGCGGCG CAGGCCGCAT CGTCATCTCC CTCCCCGCAA GACGCATTCG AGCTCTCCTC CGGCGTCCTG CTCGCCTTCG CCTTCCCGGA TCGTGTCGCC AGGAACCGTG GCAATGGCAG CTTCACGCTC GCCAATGGCC GCGGCGCCGC GGTTGAGCAG ACTTCCGCGC TGGCGCGCGC GCCGTATCTG GCAGTCGGTG AGCTAACCGG CAGCGCCGCA CAGGGCCGCA TCCTGCTGGC GGCGCCGATC ACGCTGTCCG AGATCGAACT GCATTTCGGC GATCAGATTA CCGACGCCGA CGAGGTGAGT TTCGACCGCT CCGCGATGGC GCTCCGCGCT CGGCGCCGCC GCGCCTTGCA TGCGATCACG CTGTCCGAAG CACCGCTGGC GCTGACGCCG TCCGATCAGA CCGCGCGCGT GCTCGCCGAG GGCCTTGTCG TGGCCGGACT CGACCGGCTG CCGTGGTCGA AGCAGCTTCA GCAATGGCGC GGCCGGGTGA TGTTTCTGCG CAAGGCCGAG GGTGACCCAT GGCCTGATCT GTCGGATGCC GCCCTCGCCG ACTCGCGCGA AAATTGGCTG GTGCCCGCCC TGTTCGACAA GACCGGCCTG AAGGATTTTT CGGCCTCCGA CCTGTCGGAC GCCCTGATGA ATCTGTTGCC GTGGGAGCTG CGCGCCCGGC TCGACCGCGA GGCGCCGACG CATTTCGAGG CGCCGACCGG CTCGAAGCTG CCGATCGATT ACGAAGCCGA ACAGGGCCCC ACCATCGCGG TGCGGCTGCA GGAATTGTTC GGCCTCACCA CCCATCCATC GGTCGCAGGC GGCGCGGTGC CTCTGGTGCT GGAACTGCTG TCGCCGGCGC ACCGTCCCGT GCAGGTCACG CGCGACCTGC CGGGGTTCTG GCGCGGCTCG TATGCCGGAG TGCGGGCCGA TCTGCGCGGC CGCTATCCGC GTCACCCCTG GCCCGAAGAC CCCGCCTCGG CGCCGCCGAC CCGCCGCGCC AAGCCGAAAG GCACCTGA
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Protein sequence | MTRTFDTPLP IDDALDELTA ALEASNTAVL VAPPGAGKTT RVPLALLDAP WLRNQKIIVL EPRRIAARAS AERMAKTLSE KAGERIGYRV RFGSKVSRAT RIEVVTEGIF TRQILDDPEL NGVAAVLFDE FHERSLDADL GLALARDAQQ GLREDLRILV MSATIDGARV ARLLGDAPVV ESLGRAFPVE TRYLGRRSDA PLERLMAEAI AQALRAETGS VLAFLPGAAE IRRTETMLRE RVQDPGVEIV PLFGALDAAV QDRAIQPAPK GQRKVVLATS IAETSLTIEG VRIVVDCGLS RVPRYEPDLG LTRLETVRAS RAAVDQRRGR AGRIEPGVCY RLWDEPQTAS LPAYTQPEIL SADLSSLLLD LAQWGVADPS SLAFLDPPPQ PALKEARELL GELGALDPDG RITDEGRSLR AMALPPRLAR MIVDAAHHGC AEDAAEVAAI LTERGLGGDS ADLDHRRDQF RRDRSQRASS ARQMAQRWAA QAASSSPSPQ DAFELSSGVL LAFAFPDRVA RNRGNGSFTL ANGRGAAVEQ TSALARAPYL AVGELTGSAA QGRILLAAPI TLSEIELHFG DQITDADEVS FDRSAMALRA RRRRALHAIT LSEAPLALTP SDQTARVLAE GLVVAGLDRL PWSKQLQQWR GRVMFLRKAE GDPWPDLSDA ALADSRENWL VPALFDKTGL KDFSASDLSD ALMNLLPWEL RARLDREAPT HFEAPTGSKL PIDYEAEQGP TIAVRLQELF GLTTHPSVAG GAVPLVLELL SPAHRPVQVT RDLPGFWRGS YAGVRADLRG RYPRHPWPED PASAPPTRRA KPKGT
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