Gene Rpal_0536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0536 
Symbol 
ID6408185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp583921 
End bp586398 
Gene Length2478 bp 
Protein Length825 aa 
Translation table11 
GC content70% 
IMG OID642710448 
ProductATP-dependent helicase HrpB 
Protein accessionYP_001989571 
Protein GI192288966 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01970] ATP-dependent helicase HrpB 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACCCGCA CCTTCGACAC CCCGCTGCCG ATCGACGACG CTCTCGACGA GCTCACCGCC 
GCGCTTGAGG CGAGCAATAC CGCCGTGTTG GTCGCGCCCC CCGGCGCCGG CAAGACCACC
CGCGTGCCGC TCGCGTTGCT CGATGCACCG TGGCTGAGAA ACCAAAAGAT CATCGTGCTG
GAGCCACGGC GGATCGCCGC CCGCGCCAGC GCCGAGCGGA TGGCGAAGAC GCTGAGCGAG
AAGGCTGGCG AGAGGATCGG TTACCGCGTC CGATTCGGCT CCAAGGTGTC ACGCGCCACC
CGGATCGAGG TCGTCACCGA GGGTATTTTC ACCCGCCAGA TCCTCGACGA CCCGGAACTC
AACGGCGTCG CCGCGGTGCT GTTCGACGAG TTTCACGAAC GCTCACTCGA CGCCGATCTC
GGCCTCGCCC TGGCTCGCGA CGCCCAGCAA GGTCTGCGCG AAGATCTGCG AATCCTGGTG
ATGTCGGCCA CCATCGACGG CGCCCGCGTC GCCCGGCTGC TCGGCGATGC GCCGGTGGTC
GAAAGCCTCG GCCGGGCGTT TCCAGTCGAG ACCCGCTATC TCGGCCGCCG CAGCGACGCG
CCGCTAGAGA GGCTGATGGC CGAGGCGATC GCGCAGGCGC TGCGGGCGGA AACCGGATCG
GTGCTGGCGT TTCTGCCCGG CGCCGCCGAG ATCCGGCGCA CCGAGACGAT GCTGCGCGAG
CGTGTGCAGG ACCCGGGGGT CGAGATCGTG CCGCTGTTCG GCGCGCTCGA CGCCGCCGTG
CAGGACCGCG CCATCCAGCC GGCGCCGAAG GGCCAGCGCA AAGTGGTGCT GGCGACCTCG
ATCGCCGAGA CCTCGCTGAC GATCGAAGGC GTACGGATCG TGGTCGATTG CGGCTTGTCA
CGGGTCCCCC GTTACGAGCC CGACCTCGGC CTCACCCGGC TCGAGACCGT CCGCGCCTCG
CGCGCCGCGG TCGATCAGCG CCGCGGCCGC GCCGGCCGTA TCGAGCCCGG CGTGTGCTAC
CGACTTTGGG ACGAGCCGCA GACCGCGTCG CTGCCGGCCT ATACGCAACC TGAAATCCTA
TCCGCCGATC TGTCATCGCT GCTGCTCGAC CTCGCCCAAT GGGGCGTTGC CGATCCGTCG
TCGCTGGCGT TTCTCGATCC GCCGCCCCAG CCGGCGCTGA AGGAAGCCCG TGAGCTGCTC
GGCGAGCTCG GCGCACTCGA CCCGGACGGC CGCATCACCG ACGAGGGCCG CAGCCTGCGG
GCGATGGCGC TGCCGCCCCG GTTGGCGCGG ATGATCGTCG ATGCCGCCCA CCACGGCTGC
GCCGAGGACG CCGCCGAAGT CGCCGCGATT CTCACCGAGC GCGGGCTGGG CGGCGATAGC
GCCGACCTCG ACCATCGCCG TGATCAATTC CGCCGCGACC GCTCGCAGCG CGCCAGCAGC
GCCCGGCAGA TGGCGCAGCG CTGGGCGGCG CAGGCCGCAT CGTCATCTCC CTCCCCGCAA
GACGCATTCG AGCTCTCCTC CGGCGTCCTG CTCGCCTTCG CCTTCCCGGA TCGTGTCGCC
AGGAACCGTG GCAATGGCAG CTTCACGCTC GCCAATGGCC GCGGCGCCGC GGTTGAGCAG
ACTTCCGCGC TGGCGCGCGC GCCGTATCTG GCAGTCGGTG AGCTAACCGG CAGCGCCGCA
CAGGGCCGCA TCCTGCTGGC GGCGCCGATC ACGCTGTCCG AGATCGAACT GCATTTCGGC
GATCAGATTA CCGACGCCGA CGAGGTGAGT TTCGACCGCT CCGCGATGGC GCTCCGCGCT
CGGCGCCGCC GCGCCTTGCA TGCGATCACG CTGTCCGAAG CACCGCTGGC GCTGACGCCG
TCCGATCAGA CCGCGCGCGT GCTCGCCGAG GGCCTTGTCG TGGCCGGACT CGACCGGCTG
CCGTGGTCGA AGCAGCTTCA GCAATGGCGC GGCCGGGTGA TGTTTCTGCG CAAGGCCGAG
GGTGACCCAT GGCCTGATCT GTCGGATGCC GCCCTCGCCG ACTCGCGCGA AAATTGGCTG
GTGCCCGCCC TGTTCGACAA GACCGGCCTG AAGGATTTTT CGGCCTCCGA CCTGTCGGAC
GCCCTGATGA ATCTGTTGCC GTGGGAGCTG CGCGCCCGGC TCGACCGCGA GGCGCCGACG
CATTTCGAGG CGCCGACCGG CTCGAAGCTG CCGATCGATT ACGAAGCCGA ACAGGGCCCC
ACCATCGCGG TGCGGCTGCA GGAATTGTTC GGCCTCACCA CCCATCCATC GGTCGCAGGC
GGCGCGGTGC CTCTGGTGCT GGAACTGCTG TCGCCGGCGC ACCGTCCCGT GCAGGTCACG
CGCGACCTGC CGGGGTTCTG GCGCGGCTCG TATGCCGGAG TGCGGGCCGA TCTGCGCGGC
CGCTATCCGC GTCACCCCTG GCCCGAAGAC CCCGCCTCGG CGCCGCCGAC CCGCCGCGCC
AAGCCGAAAG GCACCTGA
 
Protein sequence
MTRTFDTPLP IDDALDELTA ALEASNTAVL VAPPGAGKTT RVPLALLDAP WLRNQKIIVL 
EPRRIAARAS AERMAKTLSE KAGERIGYRV RFGSKVSRAT RIEVVTEGIF TRQILDDPEL
NGVAAVLFDE FHERSLDADL GLALARDAQQ GLREDLRILV MSATIDGARV ARLLGDAPVV
ESLGRAFPVE TRYLGRRSDA PLERLMAEAI AQALRAETGS VLAFLPGAAE IRRTETMLRE
RVQDPGVEIV PLFGALDAAV QDRAIQPAPK GQRKVVLATS IAETSLTIEG VRIVVDCGLS
RVPRYEPDLG LTRLETVRAS RAAVDQRRGR AGRIEPGVCY RLWDEPQTAS LPAYTQPEIL
SADLSSLLLD LAQWGVADPS SLAFLDPPPQ PALKEARELL GELGALDPDG RITDEGRSLR
AMALPPRLAR MIVDAAHHGC AEDAAEVAAI LTERGLGGDS ADLDHRRDQF RRDRSQRASS
ARQMAQRWAA QAASSSPSPQ DAFELSSGVL LAFAFPDRVA RNRGNGSFTL ANGRGAAVEQ
TSALARAPYL AVGELTGSAA QGRILLAAPI TLSEIELHFG DQITDADEVS FDRSAMALRA
RRRRALHAIT LSEAPLALTP SDQTARVLAE GLVVAGLDRL PWSKQLQQWR GRVMFLRKAE
GDPWPDLSDA ALADSRENWL VPALFDKTGL KDFSASDLSD ALMNLLPWEL RARLDREAPT
HFEAPTGSKL PIDYEAEQGP TIAVRLQELF GLTTHPSVAG GAVPLVLELL SPAHRPVQVT
RDLPGFWRGS YAGVRADLRG RYPRHPWPED PASAPPTRRA KPKGT