Gene Rpal_0500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0500 
Symbol 
ID6408149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp544113 
End bp544730 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content69% 
IMG OID642710412 
ProductSNARE associated Golgi protein 
Protein accessionYP_001989535 
Protein GI192288930 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.249861 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGTTCAC TGCTCGACTC GCTGGTCCAT TTCGCCGCGT CGCATTCCGG CCTCGCCTAT 
CTGGCGCTGT TTATGGCGGC GCTGCTCGAA GCCGTGCCGG TGGTGGGATC GCTGGTGCCG 
GGATCGACCG TGATCCTGGC GCTGAGCGCT CTGATTCCCG GTGGCGAATT GAGTCTGGCT 
GGGGTTCTCG CGTCGGCGAT CGCCGGCGCG CTGATCGGCG ATGGTGCGGC GTATTGGGTC 
GGCCATCGCG CGCAGCGCAG CATTTTAAGT GCCTGGCCGC TGTCGAACTA TCCGGACGTT 
GTGGCGCAGG CCGAAGCGTT CTTCGTGCGC TACGGCACCT GGGCGGTGTT GTTCGGCCGG 
TTCGTACCGC CGATCCGCGC CTTCGTGCCG GTCACCGCCG GCGCACTGCA GATGACGCCG 
CGGCGGTTCT TCGCCGTCGA TGTGCCTGCG ATCCTGCTGT GGGCCCCGGC GCACGTGCTG 
CCTGGCGTGG TCGCGGCCAC CGCGCTGGAG CATAACCACG CGACGCTGCA CCACTGGCTG 
CCGGTGCTGG CCGGCGTCGC CGGAACGCTG CTGCTGGGGC TATGGGCGTA TCGGCGTTGG 
AGGGGCACGC CGGCCTAG
 
Protein sequence
MSSLLDSLVH FAASHSGLAY LALFMAALLE AVPVVGSLVP GSTVILALSA LIPGGELSLA 
GVLASAIAGA LIGDGAAYWV GHRAQRSILS AWPLSNYPDV VAQAEAFFVR YGTWAVLFGR 
FVPPIRAFVP VTAGALQMTP RRFFAVDVPA ILLWAPAHVL PGVVAATALE HNHATLHHWL 
PVLAGVAGTL LLGLWAYRRW RGTPA