| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0495 |
|---|
| Symbol | |
|---|
| ID | 6408144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 536095 |
|---|
| End bp | 539325 |
|---|
| Gene Length | 3231 bp |
|---|
| Protein Length | 1076 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642710407 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001989530 |
|---|
| Protein GI | 192288925 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.359716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGT CGACCCGGCT GACCCTCGCC ATGGTAGCGC TGGTTCTGGT GACCACCGCG
GTCCTCGGAT TTCTCAACTA CCAAAATGTC GTCGACCTGG TGATGCCCCG GGCCCTGATG
CGGCTTCACA CCCACGCTCA GCTCAACGCG CTGCTGATCG AGACTTCGCT GCAGAATACG
CACGCCGATG CGGTCGGGGC GCAGTCTTCG GCGGCATTGC GCGATCTGCT GACGGCCCGG
CGCGACGGCC TGCAGAGCGG CGGCGAGGAG CCGGCGAATT GGCGCAAGCG GATCGAAGCC
CGCTTCATCG CCGAGATGGT TGCCAAGCCG AGCTGCGCGA TCCTGCGTAT CATCGGCCCG
GAGGATGACG GGCGCGAGCT GGTGCGGGTC GACCGGCGCG GCCCGAACAA CAGCATTCGC
GCCGTGCCGC CGTCCGAGCT GGCCCGGCGC GGCGACCGCA CTTACTTCAA GGAAGGCATG
GCGTTGCCGC CGAACCGGGT GGCGATGTCG AAGGTCGAGC TCAACAAGAC CGCGGCCGGG
CTCGAAACAC CCTATGTGCC GACGGTGCGG ACCATGGCAC CGATCGACGC GGCCGATGGA
ACGCGGCTCG GTCTGCTCGT CATCAATACC GATCTGAGCG GCCTGCTCAA GCGGATCCGC
GAAAGTTCCG ACGGCAGCAA CATCATCTAC GTCGTCAACG CCGATGGCGA TTACTTGCTG
CATCCCGACC GGTCGCGCGA GTTCGGTTTC GACATCGGCA AACCGAGCCG CATCCAAGAC
GACTTCCCGC GCATGTCCGA ACTGCTGCTT CTCCGCAAGG GTGGCGATAC GCCGACACTG
GTCGCTGACA GCGCCGGCGA CCGCTTCGGC GCCGGGTGGG ACTGGGCCGA GTTGCCGAAC
GGGCCGAGGC TCGCGGTGGT GGAAATGCGG CCCTATGTGT CGCTGACGTC GGTGCAAACG
GCGGTACGGA ATTCCACCAT CCTGGGCGGC ACGGTGGCGA TCCTGGTGGC GATGCTGATG
GCGTTTCCGC TCGCGCGATC GTTGACGCGA CCGTTGGTAC GGATCACCAA TTCGATCGTC
GCATTCTCTT CGAGCGGCGT GCCGGTCAAG GTGAAGACCG GCGGCGGCCA CGAGATCAAT
ATGCTGGCCG AGGCTTTCAC ACGGATGGCT TCGGAATCCC AGCGCAAGGC CGTCGCCCTC
GCCTCCGAAG TCGAGCAGCT TTCGCGGATT GCCGAAGTGC TGCAGAACAC CATCGACAAT
ATGGTCGATC CGGTGCTGGT CGCCGACGCC AACGGCATGG TGATCCTTAC CAACCCGGCC
GCGCGGGAGA CCTTCGGTCA GCTCTCCGGC GTCGGCATGC TCAACACCAC GCGTTCGTTC
GACCGGTTCG ATGCCGACGG CAATCCGATG GCGCAGGATC AGTCGCCACT GCTACGCGCC
TATCGCGGCG AGACCATCAT CAATTTCGAG TTCGCGGTGC AGCCGATCGG CTCGGCGCGC
CGTTCCTATC TGATAGCCAA CGGCCGGCCG CTGCGGAACG AGACCGGCGA GATCCAGGGC
GCCGTGATGG TGTATCACGA CATTACCAAA ACCAAGAAGG CCGAGGACGC GCTTCGCCGC
AGCGAGCAGA TGTCGCGCGC GATCATCGAT ACGGCGCTCG ATGCGTTCGT GCAGCTCGAC
GCGCAGGGGC GGATCACCGA TTGGAGCCCG CACGCCGAGT CGATGCTGGG CTGGAGCCGC
GAGGAAGCGA TCGGCCAAGA CTTCGGCGAA CTGGCGCTGC CGCCGGATCA AACCAGAGAG
ATCAAGACCG GCTATCGACG CTTCATCGAA GCGATCGAAC ACGACATGAG CGTGATTCAG
GGCCATCGCA TCGAGATCGA AGCGGTTCGG CGCGATGGCT CGCCGATCGC ACTCGAAGTG
TCGATGACGG CACTGCCGGT CGAGGGACGG TTCGTCGTCA ACGTCTTCAT GCGCGATCTG
ACCGAGAAGA TCGCGTTCGA GGAGCAGCTT CGGCAGTCGC AGAAGATGGA GTCGATCGGA
CAACTCACCG GCGGTATCGC GCACGACTTC AACAACATGC TGACGGTGAT CACCGGCACC
ATCGACATCA TCAGCGACGG CGTCGCCGAC CAGCCGCATC TGGCCGCGAT CGCCAAGCTG
ATCAGCGAGG CGGCCGACCG CGGCGCGGAA CTGACCCGGC TGCTGCTCGC CTTCGCGCGC
AAGCAGCCGC TGCGCCCGGA CGAAACCGAG GTCAACGCGC TGCTGTCGGG CTTGCAGAGC
CTGCTGCGGC CGACGCTCGG CGAACCGATC GAAGTCGAAA CCGTACTCGC CCCCGATACG
TGGTCGATCT ATGTCGATCG CGGCCAGCTC GAATCGGCAC TGGTCAATCT TGCGGTGAAT
GCACGCGACG CGATGCCGAA GGGCGGCAAA CTCACGATCG AGACCAGCAA CGTCGTGGTG
GATCCGGATC TCGGCAAGCG GTTCGGCGAT CTGGCGCCCG GCGATTACGT GATGATTGCG
ATCACCGATT CCGGTTGCGG CATTCCGGAG ACGATCCGCA GCAAGGTGTT CGATCCGTTC
TTCACCACCA AGGAAGTCGG AAAGGGCACC GGGCTCGGTC TCAGCATGGT GTACGGCTTC
ATCAAGCAGT CCGGCGGACA CATCACGCTG GACAGCGAGG AGGGGCAGGG CACGACGTTC
CGGCTGTATC TGCCGCGAGC CCAGATCCAG GTCGACGCCG AGGTCGCGCC GGCCATCGAG
CAGAACGCGG TCGGTGGCAC CGAGACGATC CTGGTGGTCG AAGACGACGC CATGGTGCGC
AGCTACGTCA ACGCTCAGCT CAAGAGCCTC GGCTACACCA CGCTGTCAGT GGGCAACGCC
GCCGCAGCCC TGTCGATCGG CGAGAGCGAC ACCGCATTCG ACCTGCTGTT CACGGATGTC
GTGATGCCGG GCCCGATGAA CGGCGTGCAG CTCGCGGCCG AGATGATCAA GCGTCGGCCG
GGGCTCAGGG TGCTGTACAC CAGCGGCTAT TCGGAGAACG CGCTGATCCA CAATGACCGG
ATTGATTCCG ATGTCCTCCT GCTGTCGAAG CCGTATCGGC GCAGCGATCT GGCCCGGATG
ATCCGCCGGG CACTTGCGAC CAGCCAGGAG GTCGAGGCGG CGCGATCGAC CACCACCACC
GCCGCCGAGC CGGCGAAGCC GAGCAGGGCA GCAGCGGCAC GGCCGGCCTG A
|
|---|
| Protein sequence | MKLSTRLTLA MVALVLVTTA VLGFLNYQNV VDLVMPRALM RLHTHAQLNA LLIETSLQNT
HADAVGAQSS AALRDLLTAR RDGLQSGGEE PANWRKRIEA RFIAEMVAKP SCAILRIIGP
EDDGRELVRV DRRGPNNSIR AVPPSELARR GDRTYFKEGM ALPPNRVAMS KVELNKTAAG
LETPYVPTVR TMAPIDAADG TRLGLLVINT DLSGLLKRIR ESSDGSNIIY VVNADGDYLL
HPDRSREFGF DIGKPSRIQD DFPRMSELLL LRKGGDTPTL VADSAGDRFG AGWDWAELPN
GPRLAVVEMR PYVSLTSVQT AVRNSTILGG TVAILVAMLM AFPLARSLTR PLVRITNSIV
AFSSSGVPVK VKTGGGHEIN MLAEAFTRMA SESQRKAVAL ASEVEQLSRI AEVLQNTIDN
MVDPVLVADA NGMVILTNPA ARETFGQLSG VGMLNTTRSF DRFDADGNPM AQDQSPLLRA
YRGETIINFE FAVQPIGSAR RSYLIANGRP LRNETGEIQG AVMVYHDITK TKKAEDALRR
SEQMSRAIID TALDAFVQLD AQGRITDWSP HAESMLGWSR EEAIGQDFGE LALPPDQTRE
IKTGYRRFIE AIEHDMSVIQ GHRIEIEAVR RDGSPIALEV SMTALPVEGR FVVNVFMRDL
TEKIAFEEQL RQSQKMESIG QLTGGIAHDF NNMLTVITGT IDIISDGVAD QPHLAAIAKL
ISEAADRGAE LTRLLLAFAR KQPLRPDETE VNALLSGLQS LLRPTLGEPI EVETVLAPDT
WSIYVDRGQL ESALVNLAVN ARDAMPKGGK LTIETSNVVV DPDLGKRFGD LAPGDYVMIA
ITDSGCGIPE TIRSKVFDPF FTTKEVGKGT GLGLSMVYGF IKQSGGHITL DSEEGQGTTF
RLYLPRAQIQ VDAEVAPAIE QNAVGGTETI LVVEDDAMVR SYVNAQLKSL GYTTLSVGNA
AAALSIGESD TAFDLLFTDV VMPGPMNGVQ LAAEMIKRRP GLRVLYTSGY SENALIHNDR
IDSDVLLLSK PYRRSDLARM IRRALATSQE VEAARSTTTT AAEPAKPSRA AAARPA
|
|---|
| |