| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0480 |
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| Symbol | |
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| ID | 6408129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 518640 |
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| End bp | 519422 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710392 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001989515 |
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| Protein GI | 192288910 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.674549 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGACG GACTGAACGT AATTGTCACC GGATCGGCCT CAGGCCTCGG CGCCGCGACC
GCCAAGATCC TCGCCAAGGA CGGCGCGCGC CTGGTGATCA ACTACGCATC GAGCAAGGAC
GACGCCGAAA AGACCGCCGA AGAGTGCCGC AAGCTCGGCG CCGCCGAAGT GATCGTGGTG
CAGGGCGACG TCGCCAAGGA CGAGGATTGC AAACGCATCG TCGAGGCCGC GGCCCCCTGG
GGCAAGCTCG ACGCGCTGGT CAACAATGCC GGCACCACCA AGCACGTGGC GCATCATCTG
CTCGATCAAT TATCGGCCGA CGACTTCCAG CGCATCTACG CGATCAACAC CGTCGGGCCG
TACCAGATGG TTCGCGCGGC GCGCGAGCTG CTCGTCGCCG GCGCCAAGGC GGCCGGCCGG
GCTTCTGCAG TGGTCAACGT CTCATCGGTC GCGGGAATCA GCGGTATCGG CTCGTCGATC
GCCTATGCGG CCAGCAAGGG CGCGCTCAAT ACTATGACAC TGTCGCTGTC GCGCGCGCTG
GCGCCGAACA TCCGCGTCAA CGCGATCTGC CCCGGCTACA TCGACACGCC TTGGTTCACC
AAAGGCCGCG GCGCCGAGGA AGCCAAGCAG GTGCGCGACA TGGTGGTGTC GCGCGTGCCG
CTGAAGATCG CCTCGACCGC CGAAGACATC GCCGAACTGG TGTGCTTCCT GGCGACGCCG
AAATCGAGCA GCATGACCGG CGAACTGGTG CGGATGGACG CCGGCATGCA TCTGGCCGGC
TGA
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| Protein sequence | MSDGLNVIVT GSASGLGAAT AKILAKDGAR LVINYASSKD DAEKTAEECR KLGAAEVIVV
QGDVAKDEDC KRIVEAAAPW GKLDALVNNA GTTKHVAHHL LDQLSADDFQ RIYAINTVGP
YQMVRAAREL LVAGAKAAGR ASAVVNVSSV AGISGIGSSI AYAASKGALN TMTLSLSRAL
APNIRVNAIC PGYIDTPWFT KGRGAEEAKQ VRDMVVSRVP LKIASTAEDI AELVCFLATP
KSSSMTGELV RMDAGMHLAG
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