Gene Rpal_0473 details

Gene Information

• Locus tag: Rpal_0473
• ID: 6408121
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 509782
• End bp: 511851
• Gene Length: 2070 bp
• Protein Length: 689 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642710385
• Product: Carbohydrate-selective porin OprB
• Protein accession: YP_001989509
• Protein GI: 192288904
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3637] Opacity protein and related surface antigens

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.693985
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGTTC GACGACGCCC CGCCCGCCCG ACTTCGGCCC GCCGCGACTT CGGCTCGCGT 
GAGCTATCCA CGCCGCACAA TCGGATCTCT CTGCGTCCGT CCGCCTCGGC GCTGATCGCC 
GGCGCGGCGA CCGCCGCAGC TTTGCTGCTG CCGCAGGGCG CCGCCGCGGG CGGCATAGGC 
AAGCAGCGGC CGGACCCGGC GTACGACTGG AGCGGGTTCT ATGTCGGCGC CCACGCGGGT 
TACGTCCGCG GCCATGCCGG CGCGACGCTG CAGGACGCGA CGTCGGTCGC GCAGAACAGC 
AACGGCGCTG GCGGCATCAC CGCGGGCGCC CAGGCGGGCT ACAATTTCGT TACCGGATCG 
AACCTGCTGC TCGGCGTGGA GGCCGACATC TCGTTTCCGA GCTATCTGCC GCAGAATGCG 
GTGCTGTCGG AGTTCGATAA CGGTACCGCC AATACGCTGC AGCACCTCGA CTATTACGGC 
ACCGTCCGCG CCCGGCTCGG CGTCATTGCC GGCCGTTGGC TCGGCTATGT CACCGGTGGC 
CTCGCCTTCG AGCACGAGCG CTACCTCACC GATCCCGATG CCGGCCGCGT GATGAATGCT 
CGGATCGGCT GGGCCGCAGG TGCGGGCGTC GAATACGGCT TCGCGCCGAA CTGGAGCGTG 
CGGATCGAAT ATCTCTACAG CCAATACCAG AATGCGAGCG TCGATCTGCC GACCGGGGCG 
AGCTACGCCA CGTCGCTGAA TCTGCAGACC GTCCGGGTCG GCGTGAACCG CAAGATCGAT 
TGGTTCAGCA CCGGCAGCAC AGACGCCTTC CCGTCGCTCG CGGCAGTCGC CGATCCGGAG 
TCCGACCGCT GGGAGATCCA CGGCCAGACC ACTTTCATCG GGCAGGGCTA CCCGTCGTTC 
CGGGCGCCGT ATAGCGGCAC CAACAGTCTG TTTCCCGGCG CGCAGTTCAA GAACACCTGG 
AGCACCAGCC TGTTCGCCAA CGTCCGGCTG TGGGACGGCG GCGAACTCTA TTTCAACCCT 
GAATTCCTGC AGGGCTACGG GCTCAGCGAC ACGGTGGGGG CCGGCGGCTT CCCGAATGGC 
GAAGCGCAGA AATCCGGCTT CGCCTACCCG CATTTCAGCC CGTCACGGTT CTATCTGCGC 
CAGACCTTCG GGCTCGGCGG CGAGCAGGAA CAGCTCGCGT CGAGCGGTTC GCAGCTCTCC 
GGCAAGGCCG ACATCTCGCG GCTGACGCTG CAGGTCGGCC GCTTCAGCGT CATCGACGTG 
TTCGACGGCA ACTCTTACGC GCACGATCCG CGCCGCGATT TCATGAACTG GTCGATCTGG 
GCGTCGGGCG CGTTCGACTA CGCGGCCGAC AAGCTCGGCC TCGGCTATGG CGCCACCGCC 
GAACTCAACC AGAAACAATG GGCGATCCGC GCCGGCTACT TCCTGGTCGA TGCTGAATCC 
AACTCGAACA ATTACGACAT GAAGCTGCTC AGGCGCGGTG AATACGTCGC CGAGCTCGAG 
ACCCGCTATT CGCTGTTCGG CCTTCCCGGC AAGCTGCGCA CGCTGGGCTT CATCAACAGC 
ACCTATTCGG GGAGCTATCG CGAGACGCTC AACGATCCGT CGCTGAACCT CGACATCACC 
CAGACCCGCC GCGGCCGGAT CAAATACGGC TATGCGTTGA ATCTGGAGCA GGCGGTCACC 
GACGACATCG GCGTGTTCGG ACGCTGGAGC TGGAACGACG GCAAGAACGA GATCATGGCG 
TTCACCGATA TCGACAGCAG CCTGTCGGGC GGCGTGTCGA TCCGCGGCCA GCGCTGGGGC 
AGGCCGGACG ACGTGATCGG CATTGCCGGC GCGCTCAACG GCTTGTCGCG CGATCATCGC 
GATTTCCTCG CCGCCGGCGG CCTCGGCCCG CTGATCGGCG ACGGCGCTCT CAACTATCGC 
CGCGAGCGTG TGTTCGAGAG TTACTACGCG CTGGCGCTCA ATTCGTCGTG GACCGCGACC 
GCCGACTACC AGCTGATTGC CAACCCCGCC TACAACGCCG ACCGCGGCCC GGTCTCGGTG 
TTCTCTGGCC GGGTGCACGG GGAGTTCTGA 

 

Protein sequence

MIVRRRPARP TSARRDFGSR ELSTPHNRIS LRPSASALIA GAATAAALLL PQGAAAGGIG 
KQRPDPAYDW SGFYVGAHAG YVRGHAGATL QDATSVAQNS NGAGGITAGA QAGYNFVTGS 
NLLLGVEADI SFPSYLPQNA VLSEFDNGTA NTLQHLDYYG TVRARLGVIA GRWLGYVTGG 
LAFEHERYLT DPDAGRVMNA RIGWAAGAGV EYGFAPNWSV RIEYLYSQYQ NASVDLPTGA 
SYATSLNLQT VRVGVNRKID WFSTGSTDAF PSLAAVADPE SDRWEIHGQT TFIGQGYPSF 
RAPYSGTNSL FPGAQFKNTW STSLFANVRL WDGGELYFNP EFLQGYGLSD TVGAGGFPNG 
EAQKSGFAYP HFSPSRFYLR QTFGLGGEQE QLASSGSQLS GKADISRLTL QVGRFSVIDV 
FDGNSYAHDP RRDFMNWSIW ASGAFDYAAD KLGLGYGATA ELNQKQWAIR AGYFLVDAES 
NSNNYDMKLL RRGEYVAELE TRYSLFGLPG KLRTLGFINS TYSGSYRETL NDPSLNLDIT 
QTRRGRIKYG YALNLEQAVT DDIGVFGRWS WNDGKNEIMA FTDIDSSLSG GVSIRGQRWG 
RPDDVIGIAG ALNGLSRDHR DFLAAGGLGP LIGDGALNYR RERVFESYYA LALNSSWTAT 
ADYQLIANPA YNADRGPVSV FSGRVHGEF