Gene Rpal_0452 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0452 
Symbol 
ID6408100 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp487356 
End bp488747 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content65% 
IMG OID642710364 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_001989488 
Protein GI192288883 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[TIGR00089] RNA modification enzyme, MiaB family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCCGC CGCGCAAGCT GCACATCAAG TCATACGGCT GTCAGATGAA TGTCTACGAT 
GCTCAGCGCA TGGTGGATGC GCTGGCGCCG GAAGGCTTTG TCGAGACCGC GAACGTGGAT
GACGCCGACC TGGTGATCCT GAACACCTGC CACATCCGCG AAAAAGCGTC CGAGAAGGTC
TATTCCGAGC TCGGCCGGCT GCGCGTCGCG CGCGACGAAG CCGCAAACCA TGGCCGGCGG
ATGCAGATCG CGGTCGCCGG ATGCGTAGCG CAGGCGGAGG GCGAGGAAAT CATCCGCCGC
GCGCCAGTGG TCGACGTCGT GGTCGGGCCG CAGAGCTATC ACAACCTGCC GCAATTGCTG
GCAAAGGCCG AGCAGCACGG CCGAGCGCTG GAGACCGAGT TCCCGATCGA GGACAAGTTT
GGCGTGTTGC CGCAGCCGGC GCCGGACGCG ATCCGTGCCC GCGGCATTTC GGCGTTCGTG
ACTGTCCAGG AAGGCTGCGA CAAATTCTGC ACCTTCTGCG TCGTGCCCTA TACCCGCGGC
GCCGAGATGT CGCGCCCGGT GGTGGCGATC GTCGAGGACG TCAAACGGCT CGCCGAGAAC
GGGGTCCGCG AGGTCACGCT GATCGGCCAG AACGTCAATG CCTATCACGG CGACGGGCCG
GACGGGCGCG CCTGGTCGCT CGGGCGCCTG GTGCGGCGCC TTGCCGAAAT TCCCGGTATC
GTCCGGCTGC GCTACTCGAC CAGCCATCCA AACGACGTCG ACGATGATCT CTTGGCCGCG
CACCGCGATC TGCCGGCGCT GATGCCGTTC GTGCATCTGC CGGTGCAGTC CGGCTCGGAC
CGGATCTTGG CGGCGATGAA CCGCAAGCAC ACCGCCGACG ATTATCGCCG CGTGATCGAC
CGGTTCCGGT CTGCCTCCGA GACGATCGCA TTCTCGTCCG ACTTCATCGT CGGTTTCCCG
GGTGAAACCG AGCGCGATTT TTCCGCAACT CTCGCGCTTG TCGCACAAAT CGGATACGCT
GGGGCGTATT CGTTCAAATA CTCCCCGCGG CCCGGCACGC CCGCGGCGGA CATGGTGGAG
ATGGTGCCTG CAGCGGTCAT GGACGAGCGG TTGGAGCAGC TCCAGCAATT GATCGACCAG
CAGCAATCGG CCTTCAACAA GGCTGCGATC GGCCGGACCG TGGAGGTCCT GTTCGAGCGC
GCCGGCCGCA AGCCCGGTCA GATCGTCGGC CGCACCGCTT ATCTGCAGCC CGCCCATGTG
ATGGCGCCCG ACAGCATCAT CGGAAAGGTG CTGCCGGTCC GCGTCGATAG CCTCGAACGC
TACAGTCTGC TTGGCGAACT CGCATCCGCA ACCTCCCGGC CGGCCGATGC GATGGCCGCC
ACAGGAGCCT GA
 
Protein sequence
MSPPRKLHIK SYGCQMNVYD AQRMVDALAP EGFVETANVD DADLVILNTC HIREKASEKV 
YSELGRLRVA RDEAANHGRR MQIAVAGCVA QAEGEEIIRR APVVDVVVGP QSYHNLPQLL
AKAEQHGRAL ETEFPIEDKF GVLPQPAPDA IRARGISAFV TVQEGCDKFC TFCVVPYTRG
AEMSRPVVAI VEDVKRLAEN GVREVTLIGQ NVNAYHGDGP DGRAWSLGRL VRRLAEIPGI
VRLRYSTSHP NDVDDDLLAA HRDLPALMPF VHLPVQSGSD RILAAMNRKH TADDYRRVID
RFRSASETIA FSSDFIVGFP GETERDFSAT LALVAQIGYA GAYSFKYSPR PGTPAADMVE
MVPAAVMDER LEQLQQLIDQ QQSAFNKAAI GRTVEVLFER AGRKPGQIVG RTAYLQPAHV
MAPDSIIGKV LPVRVDSLER YSLLGELASA TSRPADAMAA TGA