| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0436 |
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| Symbol | |
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| ID | 6408084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 468727 |
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| End bp | 470895 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642710348 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001989472 |
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| Protein GI | 192288867 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCAATA TCCATTCCGT GGAAATCGAT TGGGGTGGCC GTCCCCTCAA GCTTGAAACC
GGCAAGGTCG CCCGCCAGGC CGACGGCGCC GTCGTCGCGA CCTATGGCGA GACCGTCGTG
CTCGCCACAG TGGTGGCCGC CAAGTCGCCC CGTGAAGGCG TCGACTTCCT CCCCCTCACC
GTCGACTACC AAGAAAAGGC CTACGCGGCC GGCCGCATTC CCGGCGGCTA TTTCAAGCGT
GAAGGCCGTC CGACCGAGAA GGAGACTCTG GTCTCCCGTC TGATCGACCG CCCGATCCGT
CCGCTGTTCG CCGACGGCTG GCGCAACGAA ACCCAGGTCA TCGTCACCGT TCTGTCGCAC
GACATGGAGA ACGATCCGGA CGTGCTGGCG ATGGTCGCCG CCTCCGCGGC GCTGACGCTG
TCCGGCGTGC CGTTCAAGGG TCCGATCGGC GCCGCCCGCG TCGGCTTCAT CAACGACGAA
TACGTGCTCA ATCCCGTGCT CGACGAGATG GCCGAAACCC AGCTTGAGCT GGTGGTTGCC
GGTACCGCCG ACGCGGTGCT GATGGTCGAA TCCGAAGCCA AGGAGCTGTC GGAAGAGATC
ATGCTCGGCG CGGTGATGTT CGGTCACCGC CACTTCCAGC CGGTGATCGA TGCGATCATC
GACCTCGCCG AGAAGGCCGC CAAGGAGCCG CGCGAACTCA CCGTCGTCGA CGACAGCGAG
ATCGAAAAGG AAATGCTCGG CCTGGTCGAG CAGGAGCTGC GTGCCGCCTA CGCCATCCCG
GTCAAGCAGG ACCGCTACGC CGCGGTCGGC AAGGTCAAGG AGAAGGCGAT TGCGCACTTC
TTCCCGGAAG GCCAGGAGCC GAAATACGAC AAGCTGCGCA TCGCCGGCGT GTTCAAGGAG
CTCGAGGCCA AGATCGTTCG CTGGAACATC CTCGACACCG GCAAGCGCAT CGACGGCCGT
GACTCAAAGA CCGTCCGCAA CATCCTGGCT CAGGTCGGCG TGCTGCCGCG CACCCACGGT
TCGGCGCTGT TCACCCGCGG TGAGACCCAG GCGCTGGTCG TGACCACGCT CGGCACCGGC
GAAGACGAGC AGTATGTCGA CTCGCTGTCG GGAACGTACA AAGAGACGTT CCTGCTGCAC
TACAACTTCC CGCCCTACTC GGTCGGTGAG ACCGGTCGCC TCGGTGGTAC CAAGCGCCGC
GAGATCGGCC ACGGCAAGCT GGCGTGGCGC GCGATCCATC CGGTGCTGCC GCCGCATCAC
GAGTTCCCCT ACACCATCCG CGTCGTCTCC GAGATCACCG AGTCGAACGG CTCGTCCTCG
ATGGCGTCGG TGTGCGGCGC CTCGCTGGCG CTGATGGACG CGGGCGTGCC GCTGAAGCGG
CCGACCGCGG GTATCGCGAT GGGCCTGATC CTGGAAGGTG AGCGCTTCGC CGTGCTGTCC
GACATCCTCG GCGACGAGGA CCACCTCGGC GACATGGACT TCAAGGTGGC CGGCACCGAG
CAGGGCATCA CCTCGCTGCA GATGGACATC AAGATCGCCG GCATCACCGA AGAGATCATG
AAGGTGGCGC TCGGCCAGGC CAAGGACGGT CGCATCCACA TCCTGGGTGA GATGTCCAAG
GCGCTCGACC GCGCCCGCGC CGAGCTCGGC GAACACGCGC CGCGCATCGA GACCTTCAAG
ATCCCGACCG ACAAGATCCG CGAAGTGATC GGCACCGGCG GCAAGGTGAT CCGCGAGATC
GTCGAGAAGA CCGGCGCCAA GGTCAACATC GAGGACGACG GCACCGTCAA GGTCGCCTCC
AGCGATGGTG AGTCGATCAA GGCTGCTATC AAGTGGATCA AGTCGATCGC CTCCGATCCG
GAGATCGGCG AGATCTACGA GGGCACCGTC GTCAAGGTGA TGGAGTTCGG CGCCTTCGTG
AACTTCTTCG GCGCCAAGGA CGGCCTGGTA CACATCAGCC AGCTCGCCGC CGGCCGCGTG
CAGAAGACCT CCGACGTCGT CAAGGAAGGC GACAAGGTCA AGGTCAAGCT GCTCGGCTTC
GACGACCGCG GCAAGACCCG GCTGTCGATG AAGGTGGTCG ATCAGACCAC CGGTGAAGAC
CTCGAAGCCA AGCAGAAGGC GGAAGCCAAG GCCGAAGGCG AAGCGCCCGC GCAGGCTGCC
GGCGAGTAA
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| Protein sequence | MFNIHSVEID WGGRPLKLET GKVARQADGA VVATYGETVV LATVVAAKSP REGVDFLPLT
VDYQEKAYAA GRIPGGYFKR EGRPTEKETL VSRLIDRPIR PLFADGWRNE TQVIVTVLSH
DMENDPDVLA MVAASAALTL SGVPFKGPIG AARVGFINDE YVLNPVLDEM AETQLELVVA
GTADAVLMVE SEAKELSEEI MLGAVMFGHR HFQPVIDAII DLAEKAAKEP RELTVVDDSE
IEKEMLGLVE QELRAAYAIP VKQDRYAAVG KVKEKAIAHF FPEGQEPKYD KLRIAGVFKE
LEAKIVRWNI LDTGKRIDGR DSKTVRNILA QVGVLPRTHG SALFTRGETQ ALVVTTLGTG
EDEQYVDSLS GTYKETFLLH YNFPPYSVGE TGRLGGTKRR EIGHGKLAWR AIHPVLPPHH
EFPYTIRVVS EITESNGSSS MASVCGASLA LMDAGVPLKR PTAGIAMGLI LEGERFAVLS
DILGDEDHLG DMDFKVAGTE QGITSLQMDI KIAGITEEIM KVALGQAKDG RIHILGEMSK
ALDRARAELG EHAPRIETFK IPTDKIREVI GTGGKVIREI VEKTGAKVNI EDDGTVKVAS
SDGESIKAAI KWIKSIASDP EIGEIYEGTV VKVMEFGAFV NFFGAKDGLV HISQLAAGRV
QKTSDVVKEG DKVKVKLLGF DDRGKTRLSM KVVDQTTGED LEAKQKAEAK AEGEAPAQAA
GE
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