| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0426 |
|---|
| Symbol | |
|---|
| ID | 6408074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 456977 |
|---|
| End bp | 457978 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642710338 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001989462 |
|---|
| Protein GI | 192288857 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGTTA AGAAAAAGCC TCTGGTCGTC GTCACCCGCA AGCTTCCGGA CTCGATCGAA
ACCCGGATGC GTGAGCTGTT CGACGCCCGG CTGAATCTCG ACGATGTCCC GATGACCGCC
GAGCAGCTCG CCGAAGCGGC ACGCACTGCC GACGTGCTGG TACCAACGGT GACCGACGAG
ATCACCGCCG CGATGGTCAA TCAGCCCGAT TGTAAGCTGC GGCTGATCGC ACATTTTGGC
AACGGCATCG ACAATCTCGA CGTGGCCGCA GCGCATGCGC GCGGCATCAC CGTCACCAAC
ACCCCCAAAG TTCTGACCGA AGACACCGCC GACATGACCA TGGCGCTCAT CCTCGCGGTG
CCGCGCCGGA TGATCGAGGG TGCCGCGCTC CTGACCGACG GCGGCGAATG GCCCGGCTGG
TCGCCGACCT GGATGCTCGG CCGCAGGCTC GGCGGCAAGC GGCTCGGCAT CATCGGCATG
GGCCGGATCG GCCAGGCGGT GGCGCGCCGC GCCCGCGCCT TCGGGCTGCA GATCCACTAT
CACAACCGCA AGCCGGTCGC GCCGCGGATC GCCGACGAAC TCGGGGCGAC CTACTGGGAT
TCACTCGACC AGATGCTGGC GCGGATGGAC ATCATCTCGG TGAACTGTCC GCACACCCCG
GCGACGTTCC ATTTGTTGTC AGCGCGGCGG CTGAAACTGG TCCGCAAGGA CGCCTTCATC
GTCAACACCG CGCGCGGCGA GGTGATCGAC GAAGAAACCC TGACCAAGCT GATCGAAGCC
GGCGACATCG CCGGCGCCGG CCTCGACGTC TACGAGCACG AGCCGGCGGT CAATCCGAAG
CTGGTCCGGC TCGCCAAGCA CGGCAAGGTG GTGCTGCTGC CGCACATGGG CTCGGCCACG
ATCGAGGGCC GTGTCGAGAT GGGCGAGAAG GTGATCATCA ACATCCGCAC CTTCCTGGAT
AATCACAAGC CGCCGGATCG CGTCCTGCCC GGGATGCTCT GA
|
|---|
| Protein sequence | MSVKKKPLVV VTRKLPDSIE TRMRELFDAR LNLDDVPMTA EQLAEAARTA DVLVPTVTDE
ITAAMVNQPD CKLRLIAHFG NGIDNLDVAA AHARGITVTN TPKVLTEDTA DMTMALILAV
PRRMIEGAAL LTDGGEWPGW SPTWMLGRRL GGKRLGIIGM GRIGQAVARR ARAFGLQIHY
HNRKPVAPRI ADELGATYWD SLDQMLARMD IISVNCPHTP ATFHLLSARR LKLVRKDAFI
VNTARGEVID EETLTKLIEA GDIAGAGLDV YEHEPAVNPK LVRLAKHGKV VLLPHMGSAT
IEGRVEMGEK VIINIRTFLD NHKPPDRVLP GML
|
|---|
| |