| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0395 |
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| Symbol | |
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| ID | 6408042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 421544 |
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| End bp | 423781 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710306 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001989431 |
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| Protein GI | 192288826 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCAAG TCCGGCTGAA GAAAAAGAAG ACGGCCCGAA TCCGTCCGCC GGCCGGCAGC
GCTAAGCCGC GCCGCAGCGC GCTGCCTGCC CCCAAGACGT TGTCGAAACC GCGCCGGACG
GCGCGGCCGG CGGACGTTGC AGAAGGTGAG CGCGCAGTAG CGGCCGCGCT GGAGGAGGCG
CGACGCTCGC ACGCGCGGCT GCGTGAGGCG ATCGACATCC TGCCCCAAGG CATCGTGTTT
CTCGATGCCG AGGGCCGCTA CATCCTCTGG AACAAGCGCT ACGCCGAGAT CTACAAGGCA
AGCGCCGATC AGTTCAGTCC CGGCGCGCGG ATCCAGGACA CCATGCGCAT CGGCATCGCG
CGCGGCGACT ATCCGGAGGC CGAGGGCCGC GAGGAAGAAT GGATCGCCGA GCGGCTGCAG
CGGATGTTCA ATCCCGGCTC CAGCCATGAG CAGGTGCTGG CCGACGGCCG CTGCATCCAG
ATCGAAGAGC GGACCACTTC CGACGGCGGC ATCATCGGCC TGCGCGTCGA CATCACCGAA
CTGAAGCAGC GCGAAGCCTC GTTCCGGCTG ATGTTCGAAA GCAATCCGGT GCCGATGATC
GTCTGCGCGG TGAACGACGA ACGCATCCTC GCCGTGAACG ATGCCGCGGT CGAGCACTAC
GGTTACTCGC CGTCCGAATT CGCCTCGCTG ACGATCCGCC GCCTGCAGGC ATTCGAGACC
GAGCTGCCCT GGGCCGGCAA CCACACCCAT GAAGAGCGCA CCGCGCGCAC CTGGAAGCAT
GTTAAGGCCG ATGGGTCGCT GATCGATCTG GCGATCTACT CCCGTCAGCT CACCTATAAT
GGCGAGCCCG CGGTGCTGCT GGCGCTGATG GACATCACCG AGCGCAAGCG CGCCGAGATG
CGGCTCGCCT TCATGGCGCA TCATGACGGC CTCACCGGGC TGCCGAACCG CAATTCGCTG
CGCAAGCGGC TCGACGAGCT GCTGATTCAG ACCCGACGCA CCGGCGAGAA GATCGCGGTG
CTGTTCGTCG GCATCGACAA TTTCAAGGCC GTCAACGACA CGCTCGGCCA TGCCGTCGGC
GACAAGCTGC TACGCGGTGT CGCCCGCCGG CTGCGCTCGA CGCTGCGTGA GGAAGATCCG
CTGGCGCGGC TCAACTCCGA CGAATTCGCC GTGATCCAGA CCGGCATCAA GCGGCCCGAG
GATATCGTGC TGCTCGCCAA GCGGCTGCTG CACGCGATCG CCGAGCCGTA TCTGCTGCAG
GGCCATTCGG TGGTGGTCGG CGCCAGCATC GGCATCGCGG TGGCGCCCGG CGACGGCGAC
GATTCCGAAA AACTGCTGAT GAACGCCGAC ATGGCGCTGT CGCGCGCCAA GAAGGACACC
CGCGGCACCT TCAGCTTCTT CGAAGTCGGG ATGGACGCGC GTGCCCAGGC GCGCCGTAAG
ATCGAGACCG ATCTGCGCGC GGCGCTGCAG CACGAAGTGC TGCGCCCTTA CTATCAGCCA
CTGGTCCGCC TCGCCGACGG CCGCATCACA GGTAGCGAAG CGCTGGTACG CTGGCCGCAT
CCTGAGCGCG GCATGATCTC GCCGGCCGAA TTCATTCCGG TCGCCGAAGA CACCGGACTG
ATCAACGCCA TCGGCGCGCA AATCCTGCGC TCGGCCTGCA TGGATGCTGC GCGCTGGCCG
GACGATGTCC GCGTCGCCGT CAACTTGTCG CCGTTGCAGT TCCGGGTCGG CAATCTGCTG
TCGGTGGTGA TGGACGCGCT GAAGCAATCC GGTCTGCCGC CGCGCCGGCT CGAGCTCGAG
ATCACCGAGA CGCTGCTGCT GGAAAAGAGC AGCCAGGTGC TGGCGACGCT GCATGCGCTG
CGCGCGCTCG GGGTGCGGAT CTCGATGGAC GATTTCGGCA CCGGCTATTC GTCGCTGAGT
TATTTGCGCA GCTTCCCGTT CGACAAGATC AAGATCGATC AGTCGTTCGT CCGCGGGCTG
TGCGACAATC GCGAATCCCA GGCGATCGTG CGCTCGATTA TCAGCCTCGG CAACGGCCTC
GGCGTCACCA TCACGGCCGA GGGCGTCGAA AGCGAGGCGG AGCTGAGCTG GCTGCGTGCA
GAAGGCTGCC AGGAAGCGCA GGGCTTCCTG TTCAGCCAGG CCCGCCCGAA CGCCGAAATC
ACCGGGCTGC TCGACCTGCA GCAGAGCGGT GCCTCCGCCG GTGCAGAGTT TGCGATGGGA
TCGGCGCGGG TGGCTTAG
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| Protein sequence | MPQVRLKKKK TARIRPPAGS AKPRRSALPA PKTLSKPRRT ARPADVAEGE RAVAAALEEA
RRSHARLREA IDILPQGIVF LDAEGRYILW NKRYAEIYKA SADQFSPGAR IQDTMRIGIA
RGDYPEAEGR EEEWIAERLQ RMFNPGSSHE QVLADGRCIQ IEERTTSDGG IIGLRVDITE
LKQREASFRL MFESNPVPMI VCAVNDERIL AVNDAAVEHY GYSPSEFASL TIRRLQAFET
ELPWAGNHTH EERTARTWKH VKADGSLIDL AIYSRQLTYN GEPAVLLALM DITERKRAEM
RLAFMAHHDG LTGLPNRNSL RKRLDELLIQ TRRTGEKIAV LFVGIDNFKA VNDTLGHAVG
DKLLRGVARR LRSTLREEDP LARLNSDEFA VIQTGIKRPE DIVLLAKRLL HAIAEPYLLQ
GHSVVVGASI GIAVAPGDGD DSEKLLMNAD MALSRAKKDT RGTFSFFEVG MDARAQARRK
IETDLRAALQ HEVLRPYYQP LVRLADGRIT GSEALVRWPH PERGMISPAE FIPVAEDTGL
INAIGAQILR SACMDAARWP DDVRVAVNLS PLQFRVGNLL SVVMDALKQS GLPPRRLELE
ITETLLLEKS SQVLATLHAL RALGVRISMD DFGTGYSSLS YLRSFPFDKI KIDQSFVRGL
CDNRESQAIV RSIISLGNGL GVTITAEGVE SEAELSWLRA EGCQEAQGFL FSQARPNAEI
TGLLDLQQSG ASAGAEFAMG SARVA
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