| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0297 |
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| Symbol | trmE |
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| ID | 6407943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 318978 |
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| End bp | 320303 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642710207 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001989333 |
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| Protein GI | 192288728 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATCCGA GCGACCAGAC CATCTTCGCC CTTGCGACCG GACCGCTGCC GTCGGCAATC
GCCATCCTGC GTGTCTCCGG ATCGCGAGCG GGCGACGTGC TGAGAGCGCT GACCGGATCA
TTACCGCCGC CCCGGCGCGC GGTGCGCTGT GATCTTCGGA GCCGAGATGG CGATCTGATC
GATGACGGCG TGGCGTTGTG GTTTCCGACG CCGGCGTCTG CCACCGGCGA AGATGTTGCC
GAATTGCACA TCCACGGCAG CCGTGCGGTG GCGGCGGCGC TGATCAAGAC CCTCTCGGCA
TTCGAAGGCG TGCGGCCGGC GGAGCCGGGC GAGTTCACCC GGCGTGGATT CGAAAACGGC
AAGCTCGACC TGACCGAAGC CGAAGGCCTC GACGATCTGA TCCATGCGGA CACCGACGCG
CAGCGGCGTC AGGCGCTGCG CCAGCTCGGC GGCGTGCTGG GCGACCGGGC GCGGCAATGG
CGCGACCAGA TCATCGAGGC ACTGGCACTG GTCGAAGCGG GGATCGACTT TTCCGACGAA
GGCGACGTTG CCGACGAGTT GATGGGGCCG GCGCGGGCGA AGATCGCAGA GCTGTCCGCA
GAGATCGCCG AGGTCTTGGC CGAGCAGGGC CGGGGCGAAA AGCTCCGCGA CGGGATGGTG
GTGGCGATCG CCGGGCCGCC GAACGTCGGC AAGTCCACTC TGATCAATCG CCTGGCGCGC
CGCGAGGTGG CGATCGTCTC GCCGCATGCC GGCACCACCC GGGATGTGAT CGAAATCCAG
CTCGATCTCG ACGGCTATCC GGTGACGGTG ATCGATACGG CGGGACTGCG AGACAGTGAC
GATCCGGTCG AGCAGGAGGG CGTCCGCCGC GCTCGCTTGC GAGCCGCGGC GGCGGATCTG
GTGCTGTGGC TGAGCACGGC GACGGACGCT TCTGATCCGG ATGTGAAAGG TCCGGAGGTC
TGGCGGGTCC GGAATAAGAT CGATTTGGCG AACGGCGAGG TGGCAGAATC CGGCCCGTCA
CAGCCCGTTT TCCGGATTTC GGCCGCGACC GGCGAGGGGT TTGCGGATTT GCTGCGCGAA
CTGACGCGAT TTGCTGCGCA GTATTTCGGG TCCGCAGAAG CCGGATTGAT CACGCGCGAC
CGCCATCGGC GGTTGCTCGC CGATGCTGCG GCATCGCTGA CACGCAGTCT CGTGCCGGGA
CTGGCCGAAG AAATCGTCGC CGAAGAACTC CGCGCTTCGG CTCACAGTCT CGGCCGATTG
CTCGGGCGGG TCGACGTCGA GGATGTCCTT GGTGAGATCT TCGGCCGGTT CTGCATTGGC
AAATAG
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| Protein sequence | MHPSDQTIFA LATGPLPSAI AILRVSGSRA GDVLRALTGS LPPPRRAVRC DLRSRDGDLI
DDGVALWFPT PASATGEDVA ELHIHGSRAV AAALIKTLSA FEGVRPAEPG EFTRRGFENG
KLDLTEAEGL DDLIHADTDA QRRQALRQLG GVLGDRARQW RDQIIEALAL VEAGIDFSDE
GDVADELMGP ARAKIAELSA EIAEVLAEQG RGEKLRDGMV VAIAGPPNVG KSTLINRLAR
REVAIVSPHA GTTRDVIEIQ LDLDGYPVTV IDTAGLRDSD DPVEQEGVRR ARLRAAAADL
VLWLSTATDA SDPDVKGPEV WRVRNKIDLA NGEVAESGPS QPVFRISAAT GEGFADLLRE
LTRFAAQYFG SAEAGLITRD RHRRLLADAA ASLTRSLVPG LAEEIVAEEL RASAHSLGRL
LGRVDVEDVL GEIFGRFCIG K
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