Gene Rpal_0221 details

Gene Information

• Locus tag: Rpal_0221
• ID: 6407865
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 240629
• End bp: 241204
• Gene Length: 576 bp
• Protein Length: 191 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642710129
• Product: beta-Ig-H3/fasciclin
• Protein accession: YP_001989257
• Protein GI: 192288652
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2335] Secreted and surface protein containing fasciclin-like repeats

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.46175
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGAAGC GAATTGCTCT GCTGACCGCC GCTGCCTTCA GCGCTCTGGC GCTCGCCGCC 
ACTGTGAGCG TCCCGGCCTC CGCCGAATCC GGCAAGATGA TGAAGAGCTC CGGCGACACC 
GTGATGGTGG GCGGCGCGCC GATGTATCCG TCGAAGACGA TCGTCGAGAA CGCCGCGAAA 
TCCAAGGATC ACACCACGCT GGTCGCCGCC GTGAAGGCCG CCGGCCTGGT CAAGACGCTC 
GACGGCAAGG GTCCGTTCAC GGTGTTCGCG CCGACCAACA TGGCGTTCGA CAAGCTGCCG 
GCCGGCACCG TCGACACCCT GATCAAGCCG GAAAACAAGG CCCAGCTCAC CAAGATCCTC 
ACCTACCACG TGGTGCCCGG CAAGCTCGAA GCCGCTGATC TCACCGACGG CAAGAAGCTG 
AAGACCGTCG AAGGCGAGAC CCTGACGGTG AAGCGGATGG GCGACCAGGT GACGCTGATC 
GACGCCAAGG GCGGCAGCTC GACCGTGACG ATTCCGAACG TCAACCAGTC GAACGGCGTC 
ATCCACGTGA TCGATACCGT GCTGATGCCG TCGTAA 

 

Protein sequence

MTKRIALLTA AAFSALALAA TVSVPASAES GKMMKSSGDT VMVGGAPMYP SKTIVENAAK 
SKDHTTLVAA VKAAGLVKTL DGKGPFTVFA PTNMAFDKLP AGTVDTLIKP ENKAQLTKIL 
TYHVVPGKLE AADLTDGKKL KTVEGETLTV KRMGDQVTLI DAKGGSSTVT IPNVNQSNGV 
IHVIDTVLMP S