Gene Rpal_0189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0189 
Symbol 
ID6407833 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp207556 
End bp208095 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content65% 
IMG OID642710099 
Product2'-5' RNA ligase 
Protein accessionYP_001989227 
Protein GI192288622 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0810981 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCGTT TGTTTACGGG ACTGGAGATT CCGGCCGAGA TCAGCCAGAC CCTGTCGAGT 
TTACGTGGCG GATTACCGGG AGCGCGCTGG GTCGACCCGG ACGATTATCA TCTCACCTTG 
CGGTTCATTG GCGACATCGA CGGCGTCACC GCCAATGAGA TCGCCTCGAC CCTGTTTCGG 
GTCAATCGCA AGCCGTTCGA AGTCACCCTG CAGGGCCTGT CGAGCTTTGG CGGCAAGAAG 
CCCCGCGCGG TGGTTGCCTC GGTGGTGCCG TCGAAGCCGC TGATCGAGCT GCAGGCCGAG 
CTCGAGCGGC TGATGCAGCG GGTCGGGCTC GATCCCGAGG GACGGAAATT CACCCCGCAC 
GTCACCCTGG CGCGGCTCCG CGGCGACGTC TCCAGCCGCG ATGTCGCCGA CTATCTGTCG 
ATCCGCGGCT ACTTCCCGTC CAAGGTGTTC AAGGCCGAGC GGTTCGTGCT GTATTCGGCC 
CGCGCCTCGA CCGGCGGCGG CCCCTATATC GTCGAAGCGC CTTACGAGCT GACCGCCTGA
 
Protein sequence
MPRLFTGLEI PAEISQTLSS LRGGLPGARW VDPDDYHLTL RFIGDIDGVT ANEIASTLFR 
VNRKPFEVTL QGLSSFGGKK PRAVVASVVP SKPLIELQAE LERLMQRVGL DPEGRKFTPH 
VTLARLRGDV SSRDVADYLS IRGYFPSKVF KAERFVLYSA RASTGGGPYI VEAPYELTA