| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0184 |
|---|
| Symbol | sucA |
|---|
| ID | 6407828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 199849 |
|---|
| End bp | 202806 |
|---|
| Gene Length | 2958 bp |
|---|
| Protein Length | 985 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642710094 |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 component |
|---|
| Protein accession | YP_001989222 |
|---|
| Protein GI | 192288617 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0567] 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR00239] 2-oxoglutarate dehydrogenase, E1 component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCGCC AGGACGCGAA TGCCGCTTTC GCCCTATCCT CCTTTCTACA GGGCGCCAAC
GCCACCTATA TCGACGATCT GTACTCTCGG TACGAAAGCG ATCCGTCCTC GGTTGATGCC
GACTGGCAGG CATTCTTCCG GAGCCTCAAA GACGCCCCCG GCGACATCCA GAAGAATGCC
GAGGGCCCGT CCTGGGAGCA GGCGAACTGG CCGCTGACCC CGCGGGACGA GCTGACCTCG
GCGCTCGACG GCAACTGGAA CCAGGTCGAA AAGGCCGTCG GCCAGAAGAT CCAGGCCAAG
GCTCAGAGCC GCGGCGTCGA ACTGTCCTCC GCCGACGTGC TGCAGGCCAC CCGCGACTCG
GTCCGGGCCC TGATGCTGAT CCGCGCCTAC CGGATGCGCG GCCATTTCCA CGCCAAGCTC
GATCCGCTCG GCCTGTCGCC GGCGAAGGAT CACGAGGAGT TGGACATCCG CTCCTACGGC
TTCACCGAGG CCGATCTCGA CCGCAAGATC TTCCTCGATC ACGTCCTTGG CCTGGAATAC
GGCTCGCTCC GCGAGATCGT CGCGATCTGC GAGCGCACCT ACTGCCAGAC CATGGGCATC
GAATTTCTGC ACATCTCCAA CGGAGCGCAG AAGGCCTGGA TCCAGGAACG GATCGAAGGT
CCGGACAAGG AGATCAGCTT CACCCGCGAG GGCCGTCGCG CGATCCTGAT GAAGCTGATC
GAATCCGAAG GCTTCGAGAA GTTCTGCGAC CTGAAGTTCA CCGGCACCAA GCGGTTCGGT
CTCGATGGCG GCGAAGCGCT GATCCCGGCG CTGGAGCAGA TCATCAAGCG CGGCGGCAAC
CTCGGCGTCC GTGAAATCGT GCTCGGCATG CCGCATCGCG GCCGCCTCAA CGTGCTGACC
CAGGTGATGG CCAAGGCCCA CCGGGCGCTG TTCCACGAGT TCAAGGGCGG TTCGGCCAAT
CCGGACGAGG TCGAAGGCTC GGGCGACGTC AAATATCACC TCGGCGCCTC GTCGGACCGC
GAGTTCGACC ACAACAAGGT CCACCTGTCG CTGACCGCCA ACCCGTCCCA CCTCGAGATC
GTTGATCCGG TGGTGCTCGG CAAGGTGCGC GCCAAGCAGG ATCAGCATGG CGATCTGCCG
GAAGAGCGCA TCTCGGTGCT GCCGCTGCTG ATGCACGGCG ACGCCGCGTT TGCCGGCCAG
GGCGTGGTCG CCGAGTGCTT CGCTCTGTCC GATCTGAAGG GCTACCGCAC CGGCGGTTCG
ATCCACTTCA TCGTCAACAA CCAGATCGGC TTCACCACCT ATCCGCGCTA TTCGCGCTCC
TCGCCGTATC CGTCGGATGT GGCGAAGATG ATCGACGCGC CCATCTTCCA CGTGAACGGC
GACGATCCGG AAGCGGTGGT GTTCGCCGCC AAGATCGCGG TCGAGTACCG GCAGAAGTTC
CACAAGCCGG TCGTCATCGA CATGTTCTGC TACCGGCGGC ACGGCCACAA CGAGGGCGAT
GAGCCGTCGT TCACCCAGCC GCTGATGTAC CGCAAGATCG CCGGCCATCC GACCACGCTG
GAGATCTACT CCAAGCGGCT GATCGCCGAC GGCGTGATCA CCGAAGGCGA AGTCGAAAAG
GCGCGGGCCG ACTGGCGCGC CCGGCTCGAT GCCGAATTCG AAGCCGCGTC CAGCTATCGG
CCGAACAAGG CCGACTGGCT CGACGGCAAG TGGGCCGGCT TCAAGTCCGC CGACCAGGAA
GAGGAGCCGC GCCGCGGCAT CACCGGCGTC GACCTGCCGA CCCTCAAGGA AATCGGCCGC
AGGATCACCA AGGTGCCGGA GGGCTTCCGC CTGCACCGCA CCGTGCAGCG CTTCCTCGAA
AACCGCGCCC GCGCGATCGA CAGCGGCAAC GGTCTCGACT GGGCGACCGG CGAAGCGCTG
GCGTTCTGCA CCATGCTGCT GGAAGGCCAT CGCATCCGGC TGTCGGGCCA GGACTCCGAA
CGCGGCACCT TCTCGCAGCG CCATTCGGTG CTGATCGATC AGGAAGACGA GACCCGCTAC
ACCCCGTTCA ATCACCTCTC GCCCGACCAG GGCCACTATG AGGTGATCAA CTCGCTGCTG
TCCGAAGAGG CGGTGCTCGG CTTCGAATAC GGCTATTCGC TGGCCGAGCC GAACGCGCTG
ACGCTGTGGG AAGCCCAGTT CGGCGATTTC GCCAACGGCG CCCAGGTGCT GTTCGACCAG
TTCATCTCGT CGGGCGAGCG CAAGTGGCTG CGCATGTCGG GTCTGGTCTG CCTGCTGCCG
CACGGCTACG AGGGCCAGGG CCCGGAGCAC TCCTCGGCCC GCCTCGAGCG CTATCTGCAG
ATGTGCGCCG AAGACAACAT GCAGGTGGTG TATCCGACCA CCCCGGCGAA CTACTTCCAT
GCGCTCCGCC GTCAGCTCAA GCGCGAGATC CGCAAGCCCT TGATCCTGAT GACGCCGAAG
TCGCTGCTTC GCCACAAGCG GGCGATCTCA CGGCTCGAAG AGCTCGGCCC CGATACCAGC
TTCCACCGCG TGCTGCTCGA CGACGCGCAG ACGCTGCCGG ACGACAAGAC CAAGCTGGTG
GCGGACGCCA AGATCCGCCG CGTCGTGGTG TGCTCGGGCA AGGTCTATTA CGACCTCTAC
GACGAGCGCG AGAAGCGCGG CATCGACGAC GTCTATCTGC TGCGCGTCGA GCAGCTCTAT
CCGGTGCCGG TGAAGACGCT GGTGCACGAG CTGTCGCGCT TCAAGGATGC GGAGCTGGTG
TGGTGTCAGG AAGAGCCGCG CAACATGGGC GGCTGGCACT TCATCGAGCC GTATCTGGAG
TGGGTGCAGA ACCAGATCGA AGCCAAGCAT CGCCGGCCGC GTTACGTCGG CCGTGCCGCC
TCGGCGGCGA CTGCGACCGG CCTGATGTCG AAGCACCTCG CGCAGCTCAA GGCGTTCCTC
GACGAAGCGT TGCGTTGA
|
|---|
| Protein sequence | MSRQDANAAF ALSSFLQGAN ATYIDDLYSR YESDPSSVDA DWQAFFRSLK DAPGDIQKNA
EGPSWEQANW PLTPRDELTS ALDGNWNQVE KAVGQKIQAK AQSRGVELSS ADVLQATRDS
VRALMLIRAY RMRGHFHAKL DPLGLSPAKD HEELDIRSYG FTEADLDRKI FLDHVLGLEY
GSLREIVAIC ERTYCQTMGI EFLHISNGAQ KAWIQERIEG PDKEISFTRE GRRAILMKLI
ESEGFEKFCD LKFTGTKRFG LDGGEALIPA LEQIIKRGGN LGVREIVLGM PHRGRLNVLT
QVMAKAHRAL FHEFKGGSAN PDEVEGSGDV KYHLGASSDR EFDHNKVHLS LTANPSHLEI
VDPVVLGKVR AKQDQHGDLP EERISVLPLL MHGDAAFAGQ GVVAECFALS DLKGYRTGGS
IHFIVNNQIG FTTYPRYSRS SPYPSDVAKM IDAPIFHVNG DDPEAVVFAA KIAVEYRQKF
HKPVVIDMFC YRRHGHNEGD EPSFTQPLMY RKIAGHPTTL EIYSKRLIAD GVITEGEVEK
ARADWRARLD AEFEAASSYR PNKADWLDGK WAGFKSADQE EEPRRGITGV DLPTLKEIGR
RITKVPEGFR LHRTVQRFLE NRARAIDSGN GLDWATGEAL AFCTMLLEGH RIRLSGQDSE
RGTFSQRHSV LIDQEDETRY TPFNHLSPDQ GHYEVINSLL SEEAVLGFEY GYSLAEPNAL
TLWEAQFGDF ANGAQVLFDQ FISSGERKWL RMSGLVCLLP HGYEGQGPEH SSARLERYLQ
MCAEDNMQVV YPTTPANYFH ALRRQLKREI RKPLILMTPK SLLRHKRAIS RLEELGPDTS
FHRVLLDDAQ TLPDDKTKLV ADAKIRRVVV CSGKVYYDLY DEREKRGIDD VYLLRVEQLY
PVPVKTLVHE LSRFKDAELV WCQEEPRNMG GWHFIEPYLE WVQNQIEAKH RRPRYVGRAA
SAATATGLMS KHLAQLKAFL DEALR
|
|---|
| |