| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0130 |
|---|
| Symbol | |
|---|
| ID | 6407773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 143717 |
|---|
| End bp | 144553 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642710039 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001989168 |
|---|
| Protein GI | 192288563 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.519096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CACGACCCAG CCTGATCCGC TCCAGCTTCC GCCACGCCGC TCTGATGGTT
GGCGCCGTGC TGATGCTGGC GCCGTTCGTC TGGATGCTGT CGACCGCGTC GAAGCCGCCG
GAAGAGATCT ACTCCAGCGA CCTGCATCTG ATCCCGCATC ACTTTGCGCT GTGGGAGAAT
CTCCGCATCG CGTTCGGCAA GGCCGATCTC GGCCGCTTCC TGCTCAACGG CGTGATCGTC
ACGGTGGCGA TCTTCACCTG CCAGGTGCTG ATCGCGTTGC CGGCCGCCTA TGCGCTCGCC
AAGCTGCGCT TCCTTGGGCG CAAGGCGCTG TTCGCGCTGG TTCTGTTCGG CATTCTGATC
CCGCCGCAGG CGACCGCGAT CCCGGTGTTC CTGCTGCTGC ACCAGCTCGG GGCGCTCGAC
AGCTACGCGG CGCTGGTGCT GCCGTTCACC ATCTCGGTGT TCGGCATCTT TCTGATGCGG
CAGTTCTTCA TGACCGTGCC GGACGATCTG CTCGACGCCG CCCGGATGGA CGGGATGTCG
GAGTTCGCCA TCGTCTGGCG GGTGATGCTG CCGACTGCGA TCCCTGCGGT CACCGCGTTC
GGCATCTTCT CGGTGGTGGC GCACTGGAAC GACTACTTCT GGCCGCTGAT CGTGCTCAAC
AGCCAGCAGT ACTACACCCC GCCGCTCGCG GTCGCGCATT TCCGCAATGC CGAGGCGGGC
ACCAGCTACG GCCCGCTGAT GGCGGCCGCG ATCGTGATCA TCACCCCGCT CGTCGTTGCC
TTCCTGCTGG CGCAGCGCCG CTTCATCGAA GGCATCACTT TGACCGGACT CAAGTAA
|
|---|
| Protein sequence | MSAARPSLIR SSFRHAALMV GAVLMLAPFV WMLSTASKPP EEIYSSDLHL IPHHFALWEN
LRIAFGKADL GRFLLNGVIV TVAIFTCQVL IALPAAYALA KLRFLGRKAL FALVLFGILI
PPQATAIPVF LLLHQLGALD SYAALVLPFT ISVFGIFLMR QFFMTVPDDL LDAARMDGMS
EFAIVWRVML PTAIPAVTAF GIFSVVAHWN DYFWPLIVLN SQQYYTPPLA VAHFRNAEAG
TSYGPLMAAA IVIITPLVVA FLLAQRRFIE GITLTGLK
|
|---|
| |