Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0126 |
Symbol | |
ID | 6407769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 139057 |
End bp | 140697 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642710035 |
Product | TrkA-N domain protein |
Protein accession | YP_001989164 |
Protein GI | 192288559 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0569] K+ transport systems, NAD-binding component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.379824 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTAGCA TCGTCCGCCT CGGGCTCTCC CGGCTGCGCC CACCGCTGAT CCTGCTGGCG TTGGTATTCG CGGCGTCGAC GCTCGGGCTG ATGCTGATCC CTGGGGTCGA TGCTCAAGGT CACCCGTGGC GGATGACGCT GTTCGACGCG TTCTATTTCG TCACCTACAC GGCGACCACG ATCGGCTTCG GCGAGCTGCC GCATCCGTTC ACCAACCAGC AGCGTGGCTT CGTCACCGTC ATCATCTATC TGTCGGTGAT CGGCTGGGCG TGGCTGCTCG GTTCGCTGCT CAGCCTGGTC CAGGAAAAGG CGTTTCAGCA GGCGCTGGTC GACCGCCGGT TTCGCCGCGC GGTCGAGAAG CTCGATCAGC CATTCTATCT GGTGTGCGGG CTCGGCGACA CCGGCATGAC GGTGGTGCAC GCCCTGCGTC AGCTCGGCTG CCGGCTGATC GCGATCGACA AGGACGAGCG CACGGTGCAG CAGCTCGAAA TCGAGGGGCT GAACGGCAAA GCGCCGGCGC TGATTGCCGA CGCTCGCTCA CCGGAGACGC TGACGGCCGC CGGGCTGATG AAGGCAGAAT GCAAAGGCGT GCTGACGCTG TGCAACGACG ATGAGGTCAA TCTCGCCGTC GCGATCACGG CTTCGATCCT CCGGCCGGGC CTGCCGGTGA TCGGCCGTGC CGACACGTCG GCGACGGCCG CGTCGATGAG TTCGCTCGGC ACGCACCGGG TCATCAATCC GTTTCGCGAG TTCGCCGAAC ACCTGACGCT GGCGATGCGG GCACCGGACG TCTATCGGCT GATCGCCTGG CTGACCAGCG CGCCCGGCGC CTACCTGTTT CCGAGCGCGC CGGCGCGGAT GCCGGCCGCA CCCGGCCATT GGATCGTGTG CGGCTACGGC CGGTTCGGCC GCGAAGTGGT GGCCGCCGTG CAGCGCGGTG GCTTCACGTC GGCGGTGATC GATCCGGTCG GTTCACGGAT CGACGGTCAT CACGCGGTCC ACGGCCGCGG CGCAGATGTT GCGGCGCTGC ACGAAGCCGG CATCGGCCAT GCGTCAGGTA TCGTCGCCGG CACCGACGAT GACGCCGAAA ATCTGGCGAT CGCGCTGGCG GCGCGGCGGC TCAAGCCCGA GATCTTCGTG ATCACCCGGC AGAACCAGCG CTCTAGCCGG ATGCTGTTCG CCAAGCTCGG CGCCGACATC ACCATGGTGC CGAGCGAGAT CATCGCCAAT CAGTGTCTGG CCGCGCTGCG CACGCCGCTG CTGGCAGACT TCCTCGAAGC CGCACGCCAC CAGGACGCGT TCTGGGCGTT CACGCTGTCG GAGCGGCTGC GCGCCGCGCT CGGCAACGAG ACGCCGCAGT TCTGGAGCAC GGTGCTCGAC GCCGACCACG CACCGAACCT AGTCGGCAGC GACGGCGCGC TGAAACAGCC GCTGACCGTG GCCGAGCTTT GCGTCGATCC AGAGCACCAG GACGCCGCGC ACCCGCTGCG GCGGCGCGCG ATCGTGCTAC GGCTGATCCG AGGCGATAGC ACGATCGAGA CGCCCGCAGA CGATGCTGTC CTGCAGCCCG GCGACACGCT GCTGTGCGTC GGCTCCGCCG CCGTCCGTGC AACACAGCAG CGGCGGCTCG GAGGCCGCTG A
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Protein sequence | MRSIVRLGLS RLRPPLILLA LVFAASTLGL MLIPGVDAQG HPWRMTLFDA FYFVTYTATT IGFGELPHPF TNQQRGFVTV IIYLSVIGWA WLLGSLLSLV QEKAFQQALV DRRFRRAVEK LDQPFYLVCG LGDTGMTVVH ALRQLGCRLI AIDKDERTVQ QLEIEGLNGK APALIADARS PETLTAAGLM KAECKGVLTL CNDDEVNLAV AITASILRPG LPVIGRADTS ATAASMSSLG THRVINPFRE FAEHLTLAMR APDVYRLIAW LTSAPGAYLF PSAPARMPAA PGHWIVCGYG RFGREVVAAV QRGGFTSAVI DPVGSRIDGH HAVHGRGADV AALHEAGIGH ASGIVAGTDD DAENLAIALA ARRLKPEIFV ITRQNQRSSR MLFAKLGADI TMVPSEIIAN QCLAALRTPL LADFLEAARH QDAFWAFTLS ERLRAALGNE TPQFWSTVLD ADHAPNLVGS DGALKQPLTV AELCVDPEHQ DAAHPLRRRA IVLRLIRGDS TIETPADDAV LQPGDTLLCV GSAAVRATQQ RRLGGR
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