| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0084 |
|---|
| Symbol | |
|---|
| ID | 6407727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 92629 |
|---|
| End bp | 94074 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642709993 |
|---|
| Product | bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase |
|---|
| Protein accession | YP_001989122 |
|---|
| Protein GI | 192288517 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0452] Phosphopantothenoylcysteine synthetase/decarboxylase
[COG4691] Plasmid stability protein |
|---|
| TIGRFAM ID | [TIGR00521] phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATC TGACGATCCG CAAGCTCGAC GACGTCCTCA AATCCGAACT GCGCCAGCGC
GCGGCCGCCA ACGGCCGCTC GATGGAGGAC GAGGTCCGGG TGATCCTACG CGACGCCTGC
CACAAGCGGC TCGGCTTCGC GGAGCCCGCC TCGGCTGACT TGTCCGTGCC AGCACCTCCC
GCAGCCGATG AGCCGGCGGA CGGGCCGCGT GCCCAGCCAC AGGCCGGCAC CGTGCGGGTG
ACGCTGATCG TCGGCGGAGG CATTGCGGCC TACAAGGCGA TGGACCTGAT CCGCCGGCTC
AAGGAGCGCG GCGCCGACGT CCGTGTGGTG CTGACCAAGG CGGCCCAGCA ATTCGTCACG
CCGCTGACCG CGAGCGCGCT GTCGCATCAG CGCTGCTACA CCGACCTGTT CGATCCCTCG
AGCGAGTTCG ATGCAGGCCA CATCCGCCTC GCGCGCGACT GTGACCTGAT CGTCGTCGCG
CCCGCGACCG CCGACCTGAT GGCCAAGATC GCCGGCGGCC ATGCCGACGA TCTGGCGACC
GCGATCCTAC TCGCCACCAA TCGCCAGATC CTGTTGGCGC CGGCGATGAA CCCGCTGATG
TGGAACAACG CCGCGACCCG GCGCAACGTC GCCCAGCTCA AGCAGGACGG CGTCGCAATG
GTCGGCCCCA ATGCCGGCGA GATGGCCGAG CGCGGCGAGG CCGGCATCGG CCGGATGGCG
GAGCCGACCG AGATTGCGGT CGCGGCCGAA GCGCTGTGGC GGCCGCAGCC GCCAAAGCCG
CTGCTCGGCA AGCGCGTGCT GATCACTGCA GGCCCCACCC ATGAGCCGAT CGATCCGGTG
CGTTACATCG CCAACCGCTC GTCCGGCAAA CAAGGCTACG CAATCGCGGC GGCCGCAGCT
GCCGCCGGCG CCGAGGTGGC GCTGATTTCC GGTCCGGTCG AGCTGCGCGC GCCGGCGGGG
GTCGATTGCA TCCGCGTGGA GTCAGCCCGC GAGATGCTCG CCGCCGTGCA ATCCGCGCTG
CCGGCGGATG TGGCGATCTT CGCCGCCGCG GTGGCGGACT GGCGGGTTGC TGCCGAAGGG
ATGCAGAAGC TCAAGAAGGG CGCCGCCGGA CCGCCACCGC TGCAGCTCAC CGAAAACCCC
GACATCCTCG CGATGATCTC GAAGCTGACC GAAGGCCGGC CGCCGCTGGT GATCGGCTTT
GCGGCCGAGA CCGAGAATCT GATCGACAAC GCGACCGCCA AGCTCGCCCG CAAGGGCTGC
GACTGGATCG TCGCCAATGA CGTCTCGCCG GCCACCGGCG TGATGGGGGG CGACCGCAAC
ACCGTGCATC TGCTGATGCG CCACGATGCC GCCACCGATC TCGAATCGTG GCCGCTGATG
ACCAAGGATG AAGTCGCGAC CGCGCTGGTG GCGCGGATCG CTCAAGCAAT GGCAGTTCAC
GCATGA
|
|---|
| Protein sequence | MANLTIRKLD DVLKSELRQR AAANGRSMED EVRVILRDAC HKRLGFAEPA SADLSVPAPP
AADEPADGPR AQPQAGTVRV TLIVGGGIAA YKAMDLIRRL KERGADVRVV LTKAAQQFVT
PLTASALSHQ RCYTDLFDPS SEFDAGHIRL ARDCDLIVVA PATADLMAKI AGGHADDLAT
AILLATNRQI LLAPAMNPLM WNNAATRRNV AQLKQDGVAM VGPNAGEMAE RGEAGIGRMA
EPTEIAVAAE ALWRPQPPKP LLGKRVLITA GPTHEPIDPV RYIANRSSGK QGYAIAAAAA
AAGAEVALIS GPVELRAPAG VDCIRVESAR EMLAAVQSAL PADVAIFAAA VADWRVAAEG
MQKLKKGAAG PPPLQLTENP DILAMISKLT EGRPPLVIGF AAETENLIDN ATAKLARKGC
DWIVANDVSP ATGVMGGDRN TVHLLMRHDA ATDLESWPLM TKDEVATALV ARIAQAMAVH
A
|
|---|
| |