| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0079 |
|---|
| Symbol | |
|---|
| ID | 6407722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 86632 |
|---|
| End bp | 87354 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642709988 |
|---|
| Product | Nucleotidyl transferase |
|---|
| Protein accession | YP_001989117 |
|---|
| Protein GI | 192288512 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.195195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTC GTCCCCACAA AGCCATGGTG CTGGCCGCCG GCCTCGGCCT GCGGATGCGC
CCGCTCACCG ATCATATGCC GAAGCCGCTG GTGCGCGTCG CCGGCCGTCC GTTGCTCGAC
CACGTGCTCG ACAGGTTGGC CGAAGTCGAC GTCACCGAAG CCGTCGTCAA CGTCCACTAT
CTGCCGGACC AGATCATCGA TCACGTCGCC GGGCGGACCA GCCCGCGGGT GATCATTTCG
GACGAGCGCG ATCAGGTGCT CGACACCGGC GGCGCGGTGG TGAAGGCGCT GCCGCTGCTC
GGCGATGCGC CGTTCTATCA TCTCAACGCT GACACGATGT GGATCGACGG CGTGCGGCCG
AATCTGGCGC GCCTCGCCGA AGCGTTCGAT CCCGCCCGGA TGGACATCCT GCTGCTGATG
GCGCCGACCG CGAACAGCAT CGGCTATGCG GGCAAGGGCG ACTTTGCGAT GAGCCCCGAC
GGCAGCCTGC ACAAGCGCAA GGAGACCGAG GTGGTGCCGT TCGTCTATGC GGGCGCCGCC
ATCATGTCGC CGGCGATTTT CAAGAACGCG CCGCAGGGCG AGTTCTCGCT GACCAAGATG
TTCGATCGCG CCGGCCAGCA GCATCGCCTG CACGGGTTGC GGCTCGACGG CTTGTGGATG
CATGTCGGCA CGCCCGACGC GGTGCCTGCA GCCGAACGGG CCTATCTCGC CAGCGTCGCC
TGA
|
|---|
| Protein sequence | MTVRPHKAMV LAAGLGLRMR PLTDHMPKPL VRVAGRPLLD HVLDRLAEVD VTEAVVNVHY
LPDQIIDHVA GRTSPRVIIS DERDQVLDTG GAVVKALPLL GDAPFYHLNA DTMWIDGVRP
NLARLAEAFD PARMDILLLM APTANSIGYA GKGDFAMSPD GSLHKRKETE VVPFVYAGAA
IMSPAIFKNA PQGEFSLTKM FDRAGQQHRL HGLRLDGLWM HVGTPDAVPA AERAYLASVA
|
|---|
| |