| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0078 |
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| Symbol | |
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| ID | 6407721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 83407 |
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| End bp | 86556 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642709987 |
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| Product | double-strand break repair protein AddB |
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| Protein accession | YP_001989116 |
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| Protein GI | 192288511 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3893] Inactivated superfamily I helicase |
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| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.160312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACCTTT TCAGCGTTCC ATCTTCGGCG CCGTTCTTGC GCACGACCAT CGCGGCCCTG
GTCGACGGCC GGCTGGTCGA GGGCTTCGAT GTGCGCACCG CGCCAGAGCG GCTCGCCGAC
GCCACGCTGT ATCTGCCGAC CCGGCGCGCC GGCCGGATGG CGCGCGAGAT CTTCTTGGAC
GTGCTCGGCG CTGACGCCGT GCTGCTGCCG CGGATCGTCG CGCTCGGCGA TATCGACGAA
GATGAGCTGG CATTCGCGCA GGCTGCGTCG GGACTCGCCG ATCTGGAAAT TCCCCCAGCG
CTCGACGGGC TGCCGCGCAG GTTGTTGCTG ACGCAGCTGA TCGCGAGCTG GGCGGCGCGG
CTGAAGCCGG ACGATCCGAC ACAGGCGCCA CTGGTTGTCG GTGGACCGGC CTCGGCGCTG
GCGCTCGCCG ACGATCTGGC GCGGCTGATC GACGACATGT CGACCCGGGG CGTCGATTGG
TCGGCGCTCG AGACACTGGT GCCCGATGCG TTTGATCGCT ACTGGAGCCT GACGCTCGAT
TTCCTCAAGA TCGCCGGCCA CGCCTGGCCG CAATATCTGA AAGAGACCGA CCGGATCGAA
CCGGCCGCGC GGCGCGACCG GCTGATCGAT GCCGAGGCGC AGCGGCTCGC GACCCAGCGC
AGCGGGCCGG TGATTGCAGC CGGCTCGACC GGCTCGATGC CGGCGACCGC GAAGCTGCTC
ACCGCGATCG CGCGTCTGCC GCACGGCGCC GTGGTGCTCC CCGGCCTCGA CATCGATCTC
GACGACGCGG CGTGGGATCT GATCGGCGGC AGCCGGGACC GGCAGGGCAA GCTCGTCACG
CCCCCATCGC CGAACCATCC GCAATACGCC ATGCATGGCC TGCTCGACCG GATGGGCGTG
ACACGTCGGG ATGTGCAGCA GCTCGGCACG CCCGCTCGGC ACGGCCGCGA ACTCCTCTCC
TCCGAGGCGC TGCGGCCGTC ATCGGCGACG GCGGTGTGGC ACGACCGGCT GAAGGATGCC
GAGGTCGATC GTCTGATCGG CGAAGGTACG GACGGACTGA CGCTGATCGA AGCGCCGAAT
TCGGAAGCCG AGGCGTTGGC GATCGCGGTG GTGCTGCGCG AGGCCCGCGA GCAGGGCAAG
ACCGCGGCGC TGGTCACGCC GGATCGCGCG CTGGCGCGCC GCGTCGTCGC CGCGCTCGGC
CGCTGGCATC TGCCGGTCGA CGATTCCGGC GGCGACTCGC TGATGGAGAC GCAGCCCGGC
ATCTTCGCAC GGCTCGCCGC CGAGACCGCG CTCGACGGAT GCGAACCGGC GACGCTGCTG
GCGCTGCTCA AGCATCCGCT GCTTCGGCTC GGACGCACGG GCTATGGCTG GCGCGGCGCG
ATCGAGACCT TGGAGCTGGC GCTGCTGCGA GGCCCCCGGC CATCCGCCGG CTGCGATGGG
CTCGCCAAGG AATTTGCGAT CTTCCGGGGC GAGCTTGCCA AGCTGAAGCG CGGCGAGGCC
AGCGCGCTGC ATCCGTCGGA GCCGCGCACG CGATTGTCCG AACCGAGCCT CGATGAAGCG
CAGGACCTCA TCGCCCAGCT CAAGGCCGCG CTCGCACCAT TGGAAACCGT TGGGCCGAAT
CCGCTCGATC TGTGCGAGAT CGGCGCACGG CATTGCGCGG CGCTGAAGGC GCTGACGACG
GATGACGAGG GCATCGCCGA AGTGTTCGAA GGGCCGCAAG GCTCGGCACT GCTGCGCGCG
TTCGACGATC TCGCCGCGGT CGGACCGGCG AGCGGCGTAT TGGTCGCGGC GCGCGACTAT
GGCGAAGTGT TCGAGACCGC GTTCGGCGAT CGCGTCGTCC GCCGTCCCGA ACTCGCCGAG
GCGCCGATCC GGATCTACGG CCCGCTCGAA GCGCGACTGA CACAGCAGGA CCGGGTTGTG
CTCGGCGGAT TGGTCGAAGG CGTGTGGCCG CCGGCGCCGC GGATCGATCC GTGGCTGAGC
CGGCCGATGC GGCACGAACT TGGGCTCGAT CTGCCGGAGC GCCGCATCGG CCTGTCGGCG
CACGATTTCG CCCAGGCACT CGGCGCCGAT GAGGTGTTCA TCACCCATGC CGCCAAGGTC
GGCGGTGCGC CCGCAGTGGC GTCGCGCTTC CTGCACCGTC TCGAAGCGGT CGCCGGCGAG
GATCGCTGGA AGGCGATGAA AGCGCGCGGG CAGATCTATC TGGACTACAC GCACGAACTC
GATCGCCCCG AGAGCGTCAC GCCGATCGCG CAGCCTGCAC CGAGGCCACC GCGGATCGCG
CGGCCGCTGA AACTGCCGGT GACCGCGATC GAAGATTGGC TGCGCGATCC CTATACGATC
TACGCCAAGT ACATCCTGCG CCTGTCGCCG CTCGATCCGG TCGACATGCC GCTGTCGGGC
GCCGATCGCG GCTCGGCGAT CCATGCGGCG CTGGGCGAAT TCACCGAGCG CTACCAGGAC
GCTCTGCCGG ACGATCCGGT GACGGCGCTG CGCCAAATCG GCCAGAAACA TTTTGCGCCG
CTGATGGATC ATGCCGAGGC GCGCGCGCTG TGGTGGCCGC GCTTCTTGCG GATTGCCACC
TGGTTCGCCG CGTGGGAGCA GCAGCGCCGC ACCGGCGTCG TGCAGGTACA GGCGGAGCGT
CGCGGCACGC TGATGATCCC GCTTGGTGGA GAGCGCAATT TCGAACTGTC GGCGCGCGCC
GACCGCATCG AACGGCGCGA TGATGGCAGC TACGCGATCC TCGACTACAA GACCGGCCAT
CCGCCGACCG GCAAGCAGGT GCGGATGGGG CTGTCGCCGC AGCTCACATT GGAAGCGGCG
ATTCTGCGCG ATGGAGGCTT TGAGGATATT CCGGCGGCCG CCTCAGTGAG CGAGCTCACT
TACGTCAAGC TCAGCGGCAA CACGCCGCCC GGCGATGAGC GCGTGCTTGA GCTCAAGATC
GAGCGCAAGG ATGAGCCGCA GCATCCCGAC GATGCCGCCG ATGAAGCGCG CGCCAAGCTG
GAAGGATTAG TCCGCCGCTT CGAAGACGAG AAGCAGTCCT ATCGCTCGCT GGTGCTGTCG
ATGTGGTCGC AGCGCTACGG CACCTATGAT GATCTGGCGC GGATCAAGGA ATGGTCGGCG
GCGGGCGGTC GCGGAGACGC GTCGTCATGA
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| Protein sequence | MHLFSVPSSA PFLRTTIAAL VDGRLVEGFD VRTAPERLAD ATLYLPTRRA GRMAREIFLD
VLGADAVLLP RIVALGDIDE DELAFAQAAS GLADLEIPPA LDGLPRRLLL TQLIASWAAR
LKPDDPTQAP LVVGGPASAL ALADDLARLI DDMSTRGVDW SALETLVPDA FDRYWSLTLD
FLKIAGHAWP QYLKETDRIE PAARRDRLID AEAQRLATQR SGPVIAAGST GSMPATAKLL
TAIARLPHGA VVLPGLDIDL DDAAWDLIGG SRDRQGKLVT PPSPNHPQYA MHGLLDRMGV
TRRDVQQLGT PARHGRELLS SEALRPSSAT AVWHDRLKDA EVDRLIGEGT DGLTLIEAPN
SEAEALAIAV VLREAREQGK TAALVTPDRA LARRVVAALG RWHLPVDDSG GDSLMETQPG
IFARLAAETA LDGCEPATLL ALLKHPLLRL GRTGYGWRGA IETLELALLR GPRPSAGCDG
LAKEFAIFRG ELAKLKRGEA SALHPSEPRT RLSEPSLDEA QDLIAQLKAA LAPLETVGPN
PLDLCEIGAR HCAALKALTT DDEGIAEVFE GPQGSALLRA FDDLAAVGPA SGVLVAARDY
GEVFETAFGD RVVRRPELAE APIRIYGPLE ARLTQQDRVV LGGLVEGVWP PAPRIDPWLS
RPMRHELGLD LPERRIGLSA HDFAQALGAD EVFITHAAKV GGAPAVASRF LHRLEAVAGE
DRWKAMKARG QIYLDYTHEL DRPESVTPIA QPAPRPPRIA RPLKLPVTAI EDWLRDPYTI
YAKYILRLSP LDPVDMPLSG ADRGSAIHAA LGEFTERYQD ALPDDPVTAL RQIGQKHFAP
LMDHAEARAL WWPRFLRIAT WFAAWEQQRR TGVVQVQAER RGTLMIPLGG ERNFELSARA
DRIERRDDGS YAILDYKTGH PPTGKQVRMG LSPQLTLEAA ILRDGGFEDI PAAASVSELT
YVKLSGNTPP GDERVLELKI ERKDEPQHPD DAADEARAKL EGLVRRFEDE KQSYRSLVLS
MWSQRYGTYD DLARIKEWSA AGGRGDASS
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