| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0067 |
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| Symbol | rpsA |
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| ID | 6407710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 70342 |
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| End bp | 72039 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642709976 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001989105 |
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| Protein GI | 192288500 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00605902 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTCGA CTGACACTTA CAACCCGACC CGCGACGATT TCGCCGCGAT GCTCGACGAG
TCCTTCGCCG GCGGCAACCT GCAGGAAAGC TCTGTTATCA AGGGCAAGGT CGTCGCGATC
GAGAAGGACA TGGCCGTCAT TGACGTCGGC CTGAAGACCG AAGGCCGCGT GCCGCTGCGC
GAATTCGCAG GTCCGGGCCG CGACAACGAG ATCAAGGTCG GCGATACCGT CGAGGTGTTC
CTCGATCGGA TCGAGAATGC GCTCGGCGAA GCCGTGCTGT CGCGCGACAA GGCGCGCCGC
GAAGAGAGCT GGGGCAAGCT CGAGAAGGCC TTCCAGAACA ACGAGAAGGT GTTCGGCGTC
ATCTTCAATC AGGTCAAGGG CGGCTTCACG GTCGACCTCG ACGGCGCCGT GGCGTTCCTG
CCGCGCTCGC AGGTCGACAT TCGTCCGATC CGCGACGTTG CGCCGCTGAT GAACAACTCG
CAGCCGTTCC AGATCCTCAA GATGGATCGC CGCCGTGGCA ACATCGTCGT GTCGCGCCGG
ACCGTGCTGG AAGAGACCCG CGCCGAGCAG CGCCAGGAGC TGGTGCAGAA CCTCGAAGAG
GGTCAGGTGA TCGACGGCGT CGTCAAGAAC ATCACCGATT ACGGTGCGTT CGTCGACCTC
GGCGGCATCG ACGGCCTGCT GCACGTGACC GATATCGCCT GGCGCCGGGT CAATCACCCG
ACCGAGGTGC TGACCATCGG CCAGACCGTC AAGGTCAAGA TCATCAAGAT CAACCACGAG
ACCCACCGCA TCTCGCTCGG CATGAAGCAG CTGCTGGACG ATCCGTGGCA GGGCATCGAG
GCCAAGTACC CGCTGAACGC GCGCTTCACC GGCCGCGTGA CCAACATCAC CGACTACGGC
GCGTTCGTCG AGCTCGAGCC GGGCATCGAA GGCCTGATCC ACGTCTCCGA GATGTCGTGG
ACCAAGAAGA ACATGCACCC CGGCAAGATC GTTTCGACCT CTCAGGAAGT CGAAGTGCAG
GTGCTCGAGG TGGATTCGGT CAAGCGCCGT ATCTCGCTCG GTCTCAAGCA GACCATGCGC
AATCCGTGGG AAGTGTTCGT CGAGAAGCAT CCGGTCGGTT CGACCGTCGA AGGCGAGGTC
AAGAACAAGA CCGAGTTCGG TCTGTTCCTG GGTCTCGACG GCGACGTCGA CGGCATGGTC
CACCTCTCGG ACCTCGACTG GAAGCTGCCG GGCGAGCAGG TGATCGACAA CTTCAAGAAG
GGCGACATGG TCAAGGCCGT GGTGCTCGAC GTGGACGTCG AAAAGGAGCG CATCTCGCTC
GGCGTCAAGC AGCTCGAAGG CGACCCCTTC GCCGAGCCGG GCGACGTCAA GAAGGGTGCT
GTCGTTACCT GCGAAGTGCT CGACGTGAAG GAAAGCGGCA TCGACGTGCA GATCGTCGGC
ACCGACTTCA ACACCTTCAT CAAGCGCTCG GAGCTGGCGC GCGACCGCAA CGACCAGCGC
AGCGACCGCT TTGCGGTTGG TGAGAAGGTC GACGCCCGCG TTATCCAGTT CGACAAGAAG
GCCCGCAAGG TCCAGGTGTC GATCAAGGCG CTGGAAGTGG CCGAGGAGAA GGAAGCCATC
GCGCAGTACG GCTCGTCCGA TTCGGGCGCG ACGCTGGGCG ACATTCTCGG CACCGCGCTC
AAGCAGCGCG ACAAGTAA
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| Protein sequence | MASTDTYNPT RDDFAAMLDE SFAGGNLQES SVIKGKVVAI EKDMAVIDVG LKTEGRVPLR
EFAGPGRDNE IKVGDTVEVF LDRIENALGE AVLSRDKARR EESWGKLEKA FQNNEKVFGV
IFNQVKGGFT VDLDGAVAFL PRSQVDIRPI RDVAPLMNNS QPFQILKMDR RRGNIVVSRR
TVLEETRAEQ RQELVQNLEE GQVIDGVVKN ITDYGAFVDL GGIDGLLHVT DIAWRRVNHP
TEVLTIGQTV KVKIIKINHE THRISLGMKQ LLDDPWQGIE AKYPLNARFT GRVTNITDYG
AFVELEPGIE GLIHVSEMSW TKKNMHPGKI VSTSQEVEVQ VLEVDSVKRR ISLGLKQTMR
NPWEVFVEKH PVGSTVEGEV KNKTEFGLFL GLDGDVDGMV HLSDLDWKLP GEQVIDNFKK
GDMVKAVVLD VDVEKERISL GVKQLEGDPF AEPGDVKKGA VVTCEVLDVK ESGIDVQIVG
TDFNTFIKRS ELARDRNDQR SDRFAVGEKV DARVIQFDKK ARKVQVSIKA LEVAEEKEAI
AQYGSSDSGA TLGDILGTAL KQRDK
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