Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0047 |
Symbol | |
ID | 6407689 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 52000 |
End bp | 52614 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642709955 |
Product | 3'-5' exonuclease |
Protein accession | YP_001989085 |
Protein GI | 192288480 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGATCC GCCTGCATCG CGGCGACCTG CCGGATCTTT CCCGCTATAC AAATTCGGTG GCGATCGACA CCGAGACGAT GGGGCTGCAT CCGCATCGCG ACCGGCTGTG CGTGGTGCAA TTGTCGAACG GCGACGGCAG CGCCGATGTG GTGCAGATTC CGCAGGGTGC GACCGATGCG CCGAACCTGA AGAAGCTGCT CGGCGATCCG GCCGTGGTGA AGATCTTCCA CTTCGCCCGA TTCGATCTGG CGGCGCTGTA CAAGGCGTTC GGCGTGATGC CGCAGCCGGT GTACTGCACC AAGATCGCCT CGCGCCTGAC CCGCACCTAC ACCGACCGTC ATGGCCTGAA GGACCTGGTG CGCGAACTTC TCGGGATTGA TCTGTCGAAG CAGCAGCAGT CCAGCGACTG GGGCGCCGAT TCCCTGAGCG ACGCGCAACT CGCTTACGCC GCCTCCGACG TGCTGCACCT GCACGCGCTG CGCGACAAGC TCGACACCAT GCTGGCGCGG GAGAATCGCA CCGATCTCGC CGCCGCCTGC TTCGGCTTCC TGCCCATCCG TGCCCGGCTC GACCTCGACG GCTGGAGCGA AGAGGACATT TTCGCTCATT CGTGA
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Protein sequence | MTIRLHRGDL PDLSRYTNSV AIDTETMGLH PHRDRLCVVQ LSNGDGSADV VQIPQGATDA PNLKKLLGDP AVVKIFHFAR FDLAALYKAF GVMPQPVYCT KIASRLTRTY TDRHGLKDLV RELLGIDLSK QQQSSDWGAD SLSDAQLAYA ASDVLHLHAL RDKLDTMLAR ENRTDLAAAC FGFLPIRARL DLDGWSEEDI FAHS
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