Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0031 |
Symbol | |
ID | 6407672 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 35360 |
End bp | 36712 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642709938 |
Product | Fmu (Sun) domain protein |
Protein accession | YP_001989069 |
Protein GI | 192288464 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGCTC CAAGATTCGC CCAAGCTTCC GAGGTGCCCG GCCTCGCTGC GCGCCGCATT GCCGCGGACA TTCTGGACGG CGTGCTGCAG AAGCGCCGCA TGCTCGACGA CCAGCTCGAA GGCCCGGCCG CGCATCCGGG TCTGAAGACG CTGTCGGATC GTGACCGCGC GCTGATGCGC CGCCTGGTCG CGACGATTTT GCGCCGTCTC GGAACGCTGG AAGGGCTGCT CGCCAAGCTG CTCGATCGCG GCGTGCCGAC CGATGCGCCG CGCGCCAAGA GCGCGCTGTT GATCGGCGCC GCGCAAATTC TCTGGATGGA CGTGCCGGAC CATGCCGCCG TCGATCTGTC GGTGCGGCTG GTGCAATCCG ACCGTCGCGC TGCCAAATAT GCCGGTCTCG TCAACGCCGT GCTGCGCCGC TGTGCGCGCG AAGGCCAGCC GCTGGTCGAG GAACTGGCGG CCGGAACGCC CGACGTGCCG CAATGGCTTT TGGCGCGCTG GAGCGAACAT TACGGTGCCG AGACCGCGCG TGCGATCGCG CACGCGATCA GCCACGAACC CTCACTCGAC CTCACGGTGA AATCCGACCC GGCGCACTGG GCGGCGCGGC TGCACGGCGA AGTGCTGCCG ACCGGCACCG TGCGCACGCT GTTGCAGGGC TCGGTGCGGA TGCTGCCGGG CTTTGATGAA GGCCAGTGGT GGGTACAGGA CGCGGCCGCC GCGCTGCCGG CACGGCTGTT CGGCGATATC GCCGGCAAGA GCGTCGCCGA TCTTTGCGCG GCCCCTGGCG GCAAGACTGC ACAGCTCGCC GCCGCCGGCG CCAGGGTCAC TGCGATCGAC CGTTCGCCCG CTCGGGTCGC GCGATTGCGC GAAAACCTGG CGCGGCTGTC GTTTGAGGTC GAAACCGGCG TCGCCGATGC GGCCGAATGG CGAGGCGATG AGACCGCCGA GTTCGACGCG GTGCTGATCG ATGCGCCCTG CGCCTCGACC GGCACGATCC GGCGGCATCC CGACGTCGCC TGGCTGAAGC AGGAGAGCGA CATCGGCGCG CTCGCTGCGG TTCAGAATCG GCTGTTGAAG AAGGCGGCGT CATTGCTGCG ACCCGGCGGT ACGTTGGTGT ATTGCACCTG TTCGCTCGAG CCCGAGGAGG GCGAGCAGGC GATCGCCGCG CTGCTCGACG CCGAGTCGTC GATGCGCCGG CAGCCGATCG ATCCGGCAGA AGTCGCCGGT CTCGCCGAGA TCGTCACCGC AGATGGTGCG CTGCGGACCC TACCGTGCCA TCTGCCGCAC AGCGATCCGC GGCTCGCCGG GCTCGACGGC TTCTATGCCG CGCGGCTGGT GAAGTCGTTG TAA
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Protein sequence | MPAPRFAQAS EVPGLAARRI AADILDGVLQ KRRMLDDQLE GPAAHPGLKT LSDRDRALMR RLVATILRRL GTLEGLLAKL LDRGVPTDAP RAKSALLIGA AQILWMDVPD HAAVDLSVRL VQSDRRAAKY AGLVNAVLRR CAREGQPLVE ELAAGTPDVP QWLLARWSEH YGAETARAIA HAISHEPSLD LTVKSDPAHW AARLHGEVLP TGTVRTLLQG SVRMLPGFDE GQWWVQDAAA ALPARLFGDI AGKSVADLCA APGGKTAQLA AAGARVTAID RSPARVARLR ENLARLSFEV ETGVADAAEW RGDETAEFDA VLIDAPCAST GTIRRHPDVA WLKQESDIGA LAAVQNRLLK KAASLLRPGG TLVYCTCSLE PEEGEQAIAA LLDAESSMRR QPIDPAEVAG LAEIVTADGA LRTLPCHLPH SDPRLAGLDG FYAARLVKSL
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