Gene Rpal_0031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_0031 
Symbol 
ID6407672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp35360 
End bp36712 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content69% 
IMG OID642709938 
ProductFmu (Sun) domain protein 
Protein accessionYP_001989069 
Protein GI192288464 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0144] tRNA and rRNA cytosine-C5-methylases 
TIGRFAM ID[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGCTC CAAGATTCGC CCAAGCTTCC GAGGTGCCCG GCCTCGCTGC GCGCCGCATT 
GCCGCGGACA TTCTGGACGG CGTGCTGCAG AAGCGCCGCA TGCTCGACGA CCAGCTCGAA
GGCCCGGCCG CGCATCCGGG TCTGAAGACG CTGTCGGATC GTGACCGCGC GCTGATGCGC
CGCCTGGTCG CGACGATTTT GCGCCGTCTC GGAACGCTGG AAGGGCTGCT CGCCAAGCTG
CTCGATCGCG GCGTGCCGAC CGATGCGCCG CGCGCCAAGA GCGCGCTGTT GATCGGCGCC
GCGCAAATTC TCTGGATGGA CGTGCCGGAC CATGCCGCCG TCGATCTGTC GGTGCGGCTG
GTGCAATCCG ACCGTCGCGC TGCCAAATAT GCCGGTCTCG TCAACGCCGT GCTGCGCCGC
TGTGCGCGCG AAGGCCAGCC GCTGGTCGAG GAACTGGCGG CCGGAACGCC CGACGTGCCG
CAATGGCTTT TGGCGCGCTG GAGCGAACAT TACGGTGCCG AGACCGCGCG TGCGATCGCG
CACGCGATCA GCCACGAACC CTCACTCGAC CTCACGGTGA AATCCGACCC GGCGCACTGG
GCGGCGCGGC TGCACGGCGA AGTGCTGCCG ACCGGCACCG TGCGCACGCT GTTGCAGGGC
TCGGTGCGGA TGCTGCCGGG CTTTGATGAA GGCCAGTGGT GGGTACAGGA CGCGGCCGCC
GCGCTGCCGG CACGGCTGTT CGGCGATATC GCCGGCAAGA GCGTCGCCGA TCTTTGCGCG
GCCCCTGGCG GCAAGACTGC ACAGCTCGCC GCCGCCGGCG CCAGGGTCAC TGCGATCGAC
CGTTCGCCCG CTCGGGTCGC GCGATTGCGC GAAAACCTGG CGCGGCTGTC GTTTGAGGTC
GAAACCGGCG TCGCCGATGC GGCCGAATGG CGAGGCGATG AGACCGCCGA GTTCGACGCG
GTGCTGATCG ATGCGCCCTG CGCCTCGACC GGCACGATCC GGCGGCATCC CGACGTCGCC
TGGCTGAAGC AGGAGAGCGA CATCGGCGCG CTCGCTGCGG TTCAGAATCG GCTGTTGAAG
AAGGCGGCGT CATTGCTGCG ACCCGGCGGT ACGTTGGTGT ATTGCACCTG TTCGCTCGAG
CCCGAGGAGG GCGAGCAGGC GATCGCCGCG CTGCTCGACG CCGAGTCGTC GATGCGCCGG
CAGCCGATCG ATCCGGCAGA AGTCGCCGGT CTCGCCGAGA TCGTCACCGC AGATGGTGCG
CTGCGGACCC TACCGTGCCA TCTGCCGCAC AGCGATCCGC GGCTCGCCGG GCTCGACGGC
TTCTATGCCG CGCGGCTGGT GAAGTCGTTG TAA
 
Protein sequence
MPAPRFAQAS EVPGLAARRI AADILDGVLQ KRRMLDDQLE GPAAHPGLKT LSDRDRALMR 
RLVATILRRL GTLEGLLAKL LDRGVPTDAP RAKSALLIGA AQILWMDVPD HAAVDLSVRL
VQSDRRAAKY AGLVNAVLRR CAREGQPLVE ELAAGTPDVP QWLLARWSEH YGAETARAIA
HAISHEPSLD LTVKSDPAHW AARLHGEVLP TGTVRTLLQG SVRMLPGFDE GQWWVQDAAA
ALPARLFGDI AGKSVADLCA APGGKTAQLA AAGARVTAID RSPARVARLR ENLARLSFEV
ETGVADAAEW RGDETAEFDA VLIDAPCAST GTIRRHPDVA WLKQESDIGA LAAVQNRLLK
KAASLLRPGG TLVYCTCSLE PEEGEQAIAA LLDAESSMRR QPIDPAEVAG LAEIVTADGA
LRTLPCHLPH SDPRLAGLDG FYAARLVKSL