| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0009 |
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| Symbol | |
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| ID | 6407650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 10724 |
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| End bp | 12415 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642709916 |
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| Product | circadian clock protein KaiC |
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| Protein accession | YP_001989047 |
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| Protein GI | 192288442 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0467] RecA-superfamily ATPases implicated in signal transduction |
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| TIGRFAM ID | [TIGR02655] circadian clock protein KaiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.310441 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGACG GCATATCCAA ATCTCTGACG GGGATCGAAG GGTTCGACGA TCTCACCCTT
GGCGGCTTGC CCTCGGGGCG CCCCAGTCTG GTGTGCGGCT CGGCCGGATG CGGCAAGACG
CTGTTCGCGT CCACCTTCCT GATCAACGGT GCGCGCCTCT ATGACGAGCC CGGCGTGTTC
GTCACCTTTG AAGAACGCCC GGTCGACATC GTCGATAACG TCGCCTCGCT CGGATTCGAT
CTGCAGGGGC TGATCGCGCA GGAGCGGGTG TTGATCGAGC ACATCGCAAT CGATCCGACC
GAGGTCGCCG AAGTCGGTGA CTACGATCTC GAAGCACTTT TTCTCCGGCT CGAGTTTGCG
GTCGACCAGA TCGGCGCCAA GCGGATCGTG CTCGACACCA TCGAGAGCCT GTTCTCGGCA
TTTCAGAATC CCGCCGTGCT GCGCGCCGAA ATCCGGAGGC TGTTCGACTG GCTGAAGCAG
AAGGGGCTGA CCGCGGTCAT CACCGGCGAG CGCGGTGACG GCACGCTGAC TAGGCAGGGG
CTCGAAGAAT ACGTCTCCGA CTGCGTCATC CTGCTCGATC ACCGTGTCGA CAATCAGATT
TCGACCCGCC GACTGCGCAT CGTCAAATAT CGCGGCACTG CGCACGGCAC CAACGAATAT
CCGTTCCTGA TCGACGAAGA GGGCTTCAGC GTTCTGCCGG TGTCTTCGCT CGGGCTGTCG
CACAAGGTGC ACGAGGAGCG GATCTCGAGC GGCGTTCCCG ACCTCGACGC GATGCTGTCC
GGGGGCGGGT TCTACCGCGG CACCAGCGTG CTGATCACCG GCGTCGCCGG CTCCGGCAAG
AGTTCGCTGG CCTGTATGAT GGTCGACGCC GCCTGCCGGC GGGGCGAGAA GGCACTATAC
CTGTCATTTG AGGAATCCGA GGCGCAGACC GTCCGCAATA TGAAATCGGT CGGTACCGAT
CTCGGCCGCT GGCTGAGTAC CGGTCAGCTT CGCTACATCG GGGCGCGTCC GACGTTCTAC
AGCCTGGAAA TGCATCTGGC AGTGATGCTG CGCGAAGTCG CCCGCTTCAA GCCGGACCTC
GTGGTGCTCG ACCCGATCTC AGCGTTCACG GAGAGTGGGC AGATCGGTGA AGTGCAATCG
ATGCTGCTGC GGATCGTCGA TTATTTGAAA TCCAACGGCA TCACCGGCGC CTTCACGCAT
CTGGCGCACG GCGCCCAGAC CGAGACCGAT GCCGGCCTGT CGTCCCTGAT GGACGCCTGG
ATCCTGCTGC TCAATCGCGA AGCGCATGGC GAGTTCAATC GCGAGCTTTA TCTCTTGAAG
GCCCGTGGCA TCGCGCATTC CAACCAGGTG CGCGAGTTCG TGATGTCGGA CGATGGCATC
CATCTGCTGC CGCCGTATCT CGGCGAAGGC GGCGCGCTGA CCGGGTCGGC GCGCAGGGCC
GAAGAAGCCA AGGAGCGCCG CGTCGAGAGC GAGCGCCGCA CCGAGGTGGC GCGGCTGCAG
GATCAGATCG AGCAGCGCCG CCGGCGTGCA CTCGCACAAA TCGAAGCGTT GAAGGCCGAT
CTTGCGGTCG ACGAAGCAGA GCTGCAGCGG CTGACCCAGG CGGAAGCCAG CTTTCGCGCG
CAGAGCGAGC GCGATGTCAC CGAAATGGCG CGAAGACGGG GTTTCATCGG CTCGGCCGAT
GACACGGACT AG
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| Protein sequence | MADGISKSLT GIEGFDDLTL GGLPSGRPSL VCGSAGCGKT LFASTFLING ARLYDEPGVF
VTFEERPVDI VDNVASLGFD LQGLIAQERV LIEHIAIDPT EVAEVGDYDL EALFLRLEFA
VDQIGAKRIV LDTIESLFSA FQNPAVLRAE IRRLFDWLKQ KGLTAVITGE RGDGTLTRQG
LEEYVSDCVI LLDHRVDNQI STRRLRIVKY RGTAHGTNEY PFLIDEEGFS VLPVSSLGLS
HKVHEERISS GVPDLDAMLS GGGFYRGTSV LITGVAGSGK SSLACMMVDA ACRRGEKALY
LSFEESEAQT VRNMKSVGTD LGRWLSTGQL RYIGARPTFY SLEMHLAVML REVARFKPDL
VVLDPISAFT ESGQIGEVQS MLLRIVDYLK SNGITGAFTH LAHGAQTETD AGLSSLMDAW
ILLLNREAHG EFNRELYLLK ARGIAHSNQV REFVMSDDGI HLLPPYLGEG GALTGSARRA
EEAKERRVES ERRTEVARLQ DQIEQRRRRA LAQIEALKAD LAVDEAELQR LTQAEASFRA
QSERDVTEMA RRRGFIGSAD DTD
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